Roles of PIP2 in the membrane binding of MIM I-BAR: insights from molecular dynamics simulations

被引:10
|
作者
Lin, Xubo [1 ,2 ]
Wang, Hongyin [3 ]
Lou, Zhichao [2 ,4 ]
Cao, Meng [2 ,5 ]
Zhang, Zuoheng [2 ,5 ]
Gu, Ning [2 ,5 ]
机构
[1] Beihang Univ, Beijing Adv Innovat Ctr Biomed Engn, Sch Biol Sci & Med Engn, Beijing, Peoples R China
[2] Southeast Univ, State Key Lab Bioelect, Jiangsu Key Lab Biomat & Devices, Sch Biol Sci & Med Engn, Nanjing 210096, Jiangsu, Peoples R China
[3] Univ Texas Hlth Sci Ctr Houston, Dept Integrat Biol & Pharmacol, McGovern Med Sch, Houston, TX 77030 USA
[4] Nanjing Forestry Univ, Coll Mat Sci & Engn, Nanjing, Jiangsu, Peoples R China
[5] Suzhou Key Lab Biomat & Technol, Collaborat Innovat Ctr Suzhou Nanosci & Technol, Suzhou, Peoples R China
来源
FEBS LETTERS | 2018年 / 592卷 / 15期
基金
中国国家自然科学基金;
关键词
MIM I-BAR; molecular dynamics simulations; PIP2; PEPTIDE CONCENTRATION; LIPID-COMPOSITION; FORCE-FIELD; DOMAINS; METASTASIS; PROTEINS; NANOPARTICLES; ORGANIZATION; CURVATURE; NANOCLUSTERS;
D O I
10.1002/1873-3468.13186
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
In order to probe the roles of PIP2 in the interactions between MIM I-BAR and model membranes, we performed a series of 10 mu s-scale coarse-grained molecular dynamics simulations. Our results indicate that PIP2 plays predominant roles in the membrane binding of MIM I-BAR in a concentration-dependent manner and via electrostatic interactions. Besides, we find that the occurrence of the membrane curvature may induce the re-distribution of lipids in the membrane and result in the local enrichment of PIP2 at negatively curved membrane areas. Combining these roles of PIP2 in the membrane binding of MIM I-BAR helps explain how MIM I-BAR senses negative curvature and, thus, contributes to maintaining membrane protrusions.
引用
收藏
页码:2533 / 2542
页数:10
相关论文
共 43 条
  • [41] Comparative Study of Receptor-, Receptor State-, and Membrane- Dependent Cholesterol Binding Sites in A2A and A1 Adenosine Receptors Using Coarse-Grained Molecular Dynamics Simulations
    Tzortzini, Efpraxia
    Corey, Robin A.
    Kolocouris, Antonios
    JOURNAL OF CHEMICAL INFORMATION AND MODELING, 2023, 63 (03) : 928 - 949
  • [42] Data showing the lipid conformations and membrane binding behaviors of beta-amyloid fibrils in phase-separated cholesterol-enriched lipid domains with and without glycolipid and oxidized cholesterol from coarse-grained molecular dynamics simulations
    Cheng, Sara Y.
    Cao, Yiyi
    Rouzbehani, Marzieh
    Cheng, Kwan H.
    DATA IN BRIEF, 2020, 30
  • [43] The solvent at antigen-binding site regulated C3d-CR2 interactions through the C-terminal tail of C3d at different ion strengths: insights from molecular dynamics simulation
    Zhang, Yan
    Guo, Jingjing
    Li, Lanlan
    Liu, Xuewei
    Yao, Xiaojun
    Liu, Huanxiang
    BIOCHIMICA ET BIOPHYSICA ACTA-GENERAL SUBJECTS, 2016, 1860 (10): : 2220 - 2231