The COMPARE Data Hubs

被引：27

作者：

Amid, Clara ^{[1
]}

Pakseresht, Nima ^{[1
]}

Silvester, Nicole ^{[1
]}

Jayathilaka, Suran ^{[1
]}

Lund, Ole ^{[2
]}

Dynovski, Lukasz D. ^{[2
]}

Pataki, Balint A. ^{[3
,4
]}

Visontai, David ^{[3
,4
]}

Xavier, Basil Britto ^{[5
]}

Alako, Blaise T. F. ^{[1
]}

Belka, Ariane ^{[6
]}

Cisneros, Jose L. B. ^{[2
]}

Cotten, Matthew ^{[7
]}

Haringhuizen, George B. ^{[8
]}

Harrison, Peter W. ^{[1
]}

Hoper, Dirk ^{[6
]}

Holt, Sam ^{[1
]}

Hundahl, Camilla ^{[2
]}

Hussein, Abdulrahman ^{[1
]}

Kaas, Rolf S. ^{[2
]}

Liu, Xin ^{[1
]}

Leinonen, Rasko ^{[1
]}

Malhotra-Kumar, Surbhi ^{[5
]}

Nieuwenhuijse, David F. ^{[7
]}

Rahman, Nadim ^{[1
]}

Ribeiro, Carolina dos S. ^{[8
]}

Skiby, Jeffrey E. ^{[2
]}

Schmitz, Dennis ^{[7
,8
]}

Steger, Jozsef ^{[3
,4
]}

Szalai-Gindl, Janos M. ^{[3
,4
]}

Thomsen, Martin C. F. ^{[2
]}

Caccio, Simone M. ^{[9
]}

Csabai, Istvan ^{[3
,4
]}

Kroneman, Annelies ^{[8
]}

Koopmans, Marion ^{[7
]}

Aarestrup, Frank ^{[2
]}

Cochrane, Guy ^{[1
]}

机构：

[1] European Bioinformat Inst, European Mol Biol Lab, Wellcome Genome Campus, Cambridge CB10 1SD, England

[2] Tech Univ Denmark, Natl Food Inst, Res Grp Genom Epidemiol, DK-2800 Lyngby, Denmark

[3] Eotvos Lorand Univ, Dept Phys Complex Syst, H-1117 Budapest, Hungary

[4] HAS, Wigner Res Ctr Phys, Dept Computat Sci, H-1121 Budapest, Hungary

[5] Univ Antwerp, Vaccine & Infect Dis Inst, Lab Med Microbiol, B-2610 Antwerp, Belgium

[6] Friedrich Loeffler Inst, Inst Diagnost Virol, D-17493 Greifswald, Germany

[7] Erasmus MC, Dept Virosci, NL-3015 Rotterdam, Netherlands

[8] Natl Inst Publ Hlth & Environm RIVM, NL-3720 Bilthoven, Netherlands

[9] ISS, European Union Reference Lab Parasites, I-00161 Rome, Italy

来源：

DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION | 2019年

基金：

欧盟地平线“2020”;

关键词：

pathogen sequencing data; data sharing platform; data hubs; pathogen portal; FAIR principles;

D O I：

10.1093/database/baz136

中图分类号：

Q [生物科学];

学科分类号：

07 ; 0710 ; 09 ;

摘要：

Data sharing enables research communities to exchange findings and build upon the knowledge that arises from their discoveries. Areas of public and animal health as well as food safety would benefit from rapid data sharing when it comes to emergencies. However, ethical, regulatory and institutional challenges, as well as lack of suitable platforms which provide an infrastructure for data sharing in structured formats, often lead to data not being shared or at most shared in form of supplementary materials in journal publications. Here, we describe an informatics platform that includes workflows for structured data storage, managing and pre-publication sharing of pathogen sequencing data and its analysis interpretations with relevant stakeholders.

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页数：14

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