Large-scale sequencing of flatfish genomes provides insights into the polyphyletic origin of their specialized body plan

被引：36

作者：

Lu, Zhenming ^{[1
]}

Gong, Li ^{[1
]}

Ren, Yandong ^{[2
]}

Chen, Yongjiu ^{[1
]}

Wang, Zhongkai ^{[2
]}

Liu, Liqin ^{[1
]}

Li, Haorong ^{[2
,3
]}

Chen, Xianqing ^{[2
]}

Li, Zhenzhu ^{[2
]}

Luo, Hairong

Jiang, Hui ^{[1
]}

Zeng, Yan ^{[4
]}

Wang, Yifan ^{[1
]}

Wang, Kun ^{[2
]}

Zhang, Chen ^{[2
]}

Jiang, Haifeng ^{[5
]}

Wan, Wenting ^{[2
]}

Qin, Yanli ^{[2
]}

Zhang, Jianshe ^{[1
]}

Zhu, Liang ^{[4
]}

Shi, Wei ^{[3
]}

He, Shunping ^{[5
]}

Mao, Bingyu ^{[4
]}

Wang, Wen ^{[2
,4
,6
]}

Kong, Xiaoyu ^{[3
]}

Li, Yongxin ^{[2
,4
]}

机构：

[1] Zhejiang Ocean Univ, Natl Engn Lab Marine Germplasm Resources Explorat, Zhoushan, Peoples R China

[2] Northwestern Polytech Univ, Sch Ecol & Environm, Xian, Peoples R China

[3] Chinese Acad Sci, South China Sea Inst Oceanol, Guangdong Prov Key Lab Appl Marine Biol, CAS Key Lab Trop Marine Bioresources & Ecol, Guangzhou, Peoples R China

[4] Chinese Acad Sci, Kunming Inst Zool, State Key Lab Genet Resources & Evolut, Kunming, Yunnan, Peoples R China

[5] Chinese Acad Sci, Inst Hydrobiol, Key Lab Aquat Biodivers & Conservat, Wuhan, Peoples R China

[6] Chinese Acad Sci, Ctr Excellence Anim Evolut & Genet, Kunming, Yunnan, Peoples R China

来源：

NATURE GENETICS | 2021年 / 53卷 / 05期

基金：

中国国家自然科学基金;

关键词：

MUSCULAR-DYSTROPHY; PHYLOGENETIC ANALYSIS; WNT/BETA-CATENIN; FIN DEVELOPMENT; GENE; ZEBRAFISH; EXPRESSION; FLOUNDER; PLEURONECTIFORMES; IDENTIFICATION;

D O I：

10.1038/s41588-021-00836-9

中图分类号：

Q3 [遗传学];

学科分类号：

071007 ; 090102 ;

摘要：

The evolutionary and genetic origins of the specialized body plan of flatfish are largely unclear. We analyzed the genomes of 11 flatfish species representing 9 of the 14 Pleuronectiforme families and conclude that Pleuronectoidei and Psettodoidei do not form a monophyletic group, suggesting independent origins from different percoid ancestors. Genomic and transcriptomic data indicate that genes related to WNT and retinoic acid pathways, hampered musculature and reduced lipids might have functioned in the evolution of the specialized body plan of Pleuronectoidei. Evolution of Psettodoidei involved similar but not identical genes. Our work provides valuable resources and insights for understanding the genetic origins of the unusual body plan of flatfishes. Analysis of 11 flatfish genomes indicates that Pleuronectoidei and Psettodoidei are not a monophyletic group. Genomic and transcriptomic data suggest that the WNT and RA pathways played a role in the evolution of the specialized body of flatfish.

引用

页码：742 / +

页数：26

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