Precise regulation of the relative rates of surface area and volume synthesis in bacterial cells growing in dynamic environments
被引:28
作者:
Shi, Handuo
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Stanford Univ, Dept Bioengn, Stanford, CA 94305 USAStanford Univ, Dept Bioengn, Stanford, CA 94305 USA
Shi, Handuo
[1
]
Hu, Yan
论文数: 0引用数: 0
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机构:
Stanford Univ, Dept Bioengn, Stanford, CA 94305 USAStanford Univ, Dept Bioengn, Stanford, CA 94305 USA
Hu, Yan
[1
]
Odermatt, Pascal D.
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h-index: 0
机构:
Stanford Univ, Dept Bioengn, Stanford, CA 94305 USA
Univ Calif San Francisco, Dept Cell & Tissue Biol, San Francisco, CA 94143 USAStanford Univ, Dept Bioengn, Stanford, CA 94305 USA
Odermatt, Pascal D.
[1
,2
]
Gonzalez, Carlos G.
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h-index: 0
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Stanford Univ, Sch Med, Dept Chem & Syst Biol, Stanford, CA 94305 USAStanford Univ, Dept Bioengn, Stanford, CA 94305 USA
Gonzalez, Carlos G.
[3
]
Zhang, Lichao
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Chan Zuckerberg Biohub, Stanford, CA 94305 USAStanford Univ, Dept Bioengn, Stanford, CA 94305 USA
Zhang, Lichao
[4
]
Elias, Joshua E.
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Chan Zuckerberg Biohub, Stanford, CA 94305 USAStanford Univ, Dept Bioengn, Stanford, CA 94305 USA
Elias, Joshua E.
[4
]
Chang, Fred
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h-index: 0
机构:
Univ Calif San Francisco, Dept Cell & Tissue Biol, San Francisco, CA 94143 USAStanford Univ, Dept Bioengn, Stanford, CA 94305 USA
Chang, Fred
[2
]
Huang, Kerwyn Casey
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h-index: 0
机构:
Stanford Univ, Dept Bioengn, Stanford, CA 94305 USA
Chan Zuckerberg Biohub, Stanford, CA 94305 USA
Stanford Univ, Sch Med, Dept Microbiol & Immunol, Stanford, CA 94305 USAStanford Univ, Dept Bioengn, Stanford, CA 94305 USA
Huang, Kerwyn Casey
[1
,4
,5
]
机构:
[1] Stanford Univ, Dept Bioengn, Stanford, CA 94305 USA
[2] Univ Calif San Francisco, Dept Cell & Tissue Biol, San Francisco, CA 94143 USA
[3] Stanford Univ, Sch Med, Dept Chem & Syst Biol, Stanford, CA 94305 USA
[4] Chan Zuckerberg Biohub, Stanford, CA 94305 USA
[5] Stanford Univ, Sch Med, Dept Microbiol & Immunol, Stanford, CA 94305 USA
The steady-state size of bacterial cells correlates with nutrient-determined growth rate. Here, we explore how rod-shaped bacterial cells regulate their morphology during rapid environmental changes. We quantify cellular dimensions throughout passage cycles of stationary-phase cells diluted into fresh medium and grown back to saturation. We find that cells exhibit characteristic dynamics in surface area to volume ratio (SA/V), which are conserved across genetic and chemical perturbations as well as across species and growth temperatures. A mathematical model with a single fitting parameter (the time delay between surface and volume synthesis) is quantitatively consistent with our SA/V experimental observations. The model supports that this time delay is due to differential expression of volume and surface-related genes, and that the first division after dilution occurs at a tightly controlled SA/V. Our minimal model thus provides insight into the connections between bacterial growth rate and cell shape in dynamic environments. Bacterial cells actively change their size and shape in response to external environments. Here, Shi et al. explore how cells regulate their morphology during rapid environmental changes, showing that the characteristic dynamics of surface area-to-volume ratio are conserved across genetic and chemical perturbations, as well as across species and growth temperatures.
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[1]
Bakshi S, 2020, DYNAMIC REGULATION G, DOI [10.1101/2020.03.27.006403, DOI 10.1101/2020.03.27.006403]
机构:
Stanford Univ, Biophys Program, Stanford, CA 94305 USAStanford Univ, Biophys Program, Stanford, CA 94305 USA
Colavin, Alexandre
;
Shi, Handuo
论文数: 0引用数: 0
h-index: 0
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Stanford Univ, Dept Bioengn, Stanford, CA 94305 USAStanford Univ, Biophys Program, Stanford, CA 94305 USA
Shi, Handuo
;
Huang, Kerwyn Casey
论文数: 0引用数: 0
h-index: 0
机构:
Stanford Univ, Biophys Program, Stanford, CA 94305 USA
Stanford Univ, Dept Bioengn, Stanford, CA 94305 USA
Stanford Univ, Sch Med, Dept Microbiol & Immunol, Stanford, CA 94305 USA
Chan Zuckerberg Biohub, San Francisco, CA 94158 USAStanford Univ, Biophys Program, Stanford, CA 94305 USA
机构:
Univ Paris, CNRS, Inst Jacques Monod, F-75205 Paris 13, FranceUniv Paris, CNRS, Inst Jacques Monod, F-75205 Paris 13, France
Davi, Valeria
;
Chevalier, Louis
论文数: 0引用数: 0
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Univ Paris, CNRS, Inst Jacques Monod, F-75205 Paris 13, FranceUniv Paris, CNRS, Inst Jacques Monod, F-75205 Paris 13, France
Chevalier, Louis
;
Guo, Haotian
论文数: 0引用数: 0
h-index: 0
机构:
Univ Paris, CNRS, Inst Jacques Monod, F-75205 Paris 13, France
Univ Paris, Ctr Res & Interdisciplinar, F-75004 Paris, FranceUniv Paris, CNRS, Inst Jacques Monod, F-75205 Paris 13, France
Guo, Haotian
;
Tanimoto, Hirokazu
论文数: 0引用数: 0
h-index: 0
机构:
Univ Paris, CNRS, Inst Jacques Monod, F-75205 Paris 13, France
Yokohama City Univ, Dept Mat Sci, Yokohama, Kanagawa 2360004, JapanUniv Paris, CNRS, Inst Jacques Monod, F-75205 Paris 13, France
Tanimoto, Hirokazu
;
Berrett, Katia
论文数: 0引用数: 0
h-index: 0
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Univ Paris, CNRS, Inst Jacques Monod, F-75205 Paris 13, FranceUniv Paris, CNRS, Inst Jacques Monod, F-75205 Paris 13, France
Berrett, Katia
;
Couturier, Etienne
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Univ Paris, CNRS, UMR 7057, Lab Matieres & Syst Complexes, F-75205 Paris 13, FranceUniv Paris, CNRS, Inst Jacques Monod, F-75205 Paris 13, France
Couturier, Etienne
;
Boudeoud, Arezki
论文数: 0引用数: 0
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Claude Bernard Lyon I, Ecole Normale Super Lyon, Reprod & Dev Plantes, Inra,Univ Lyon,CNRS, F-69364 Lyon 07, FranceUniv Paris, CNRS, Inst Jacques Monod, F-75205 Paris 13, France
机构:
Univ Calif San Diego, Dept Phys, La Jolla, CA 92093 USAUniv Calif San Diego, Dept Phys, La Jolla, CA 92093 USA
Erickson, David W.
;
Schink, Severin J.
论文数: 0引用数: 0
h-index: 0
机构:
Univ Calif San Diego, Dept Phys, La Jolla, CA 92093 USA
Tech Univ Munich, Phys Dept, Phys Complex Biosyst, D-85748 Garching, GermanyUniv Calif San Diego, Dept Phys, La Jolla, CA 92093 USA
Schink, Severin J.
;
Patsalo, Vadim
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机构:
Scripps Res Inst, Dept Chem, Skaggs Inst Chem Biol, Dept Integrat Struct & Computat Biol, La Jolla, CA 92037 USAUniv Calif San Diego, Dept Phys, La Jolla, CA 92093 USA
Patsalo, Vadim
;
Williamson, James R.
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机构:
Scripps Res Inst, Dept Chem, Skaggs Inst Chem Biol, Dept Integrat Struct & Computat Biol, La Jolla, CA 92037 USAUniv Calif San Diego, Dept Phys, La Jolla, CA 92093 USA
Williamson, James R.
;
Gerland, Ulrich
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h-index: 0
机构:
Tech Univ Munich, Phys Dept, Phys Complex Biosyst, D-85748 Garching, GermanyUniv Calif San Diego, Dept Phys, La Jolla, CA 92093 USA
Gerland, Ulrich
;
Hwa, Terence
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Univ Calif San Diego, Dept Phys, La Jolla, CA 92093 USAUniv Calif San Diego, Dept Phys, La Jolla, CA 92093 USA
机构:
Stanford Univ, Biophys Program, Stanford, CA 94305 USAStanford Univ, Biophys Program, Stanford, CA 94305 USA
Colavin, Alexandre
;
Shi, Handuo
论文数: 0引用数: 0
h-index: 0
机构:
Stanford Univ, Dept Bioengn, Stanford, CA 94305 USAStanford Univ, Biophys Program, Stanford, CA 94305 USA
Shi, Handuo
;
Huang, Kerwyn Casey
论文数: 0引用数: 0
h-index: 0
机构:
Stanford Univ, Biophys Program, Stanford, CA 94305 USA
Stanford Univ, Dept Bioengn, Stanford, CA 94305 USA
Stanford Univ, Sch Med, Dept Microbiol & Immunol, Stanford, CA 94305 USA
Chan Zuckerberg Biohub, San Francisco, CA 94158 USAStanford Univ, Biophys Program, Stanford, CA 94305 USA
机构:
Univ Paris, CNRS, Inst Jacques Monod, F-75205 Paris 13, FranceUniv Paris, CNRS, Inst Jacques Monod, F-75205 Paris 13, France
Davi, Valeria
;
Chevalier, Louis
论文数: 0引用数: 0
h-index: 0
机构:
Univ Paris, CNRS, Inst Jacques Monod, F-75205 Paris 13, FranceUniv Paris, CNRS, Inst Jacques Monod, F-75205 Paris 13, France
Chevalier, Louis
;
Guo, Haotian
论文数: 0引用数: 0
h-index: 0
机构:
Univ Paris, CNRS, Inst Jacques Monod, F-75205 Paris 13, France
Univ Paris, Ctr Res & Interdisciplinar, F-75004 Paris, FranceUniv Paris, CNRS, Inst Jacques Monod, F-75205 Paris 13, France
Guo, Haotian
;
Tanimoto, Hirokazu
论文数: 0引用数: 0
h-index: 0
机构:
Univ Paris, CNRS, Inst Jacques Monod, F-75205 Paris 13, France
Yokohama City Univ, Dept Mat Sci, Yokohama, Kanagawa 2360004, JapanUniv Paris, CNRS, Inst Jacques Monod, F-75205 Paris 13, France
Tanimoto, Hirokazu
;
Berrett, Katia
论文数: 0引用数: 0
h-index: 0
机构:
Univ Paris, CNRS, Inst Jacques Monod, F-75205 Paris 13, FranceUniv Paris, CNRS, Inst Jacques Monod, F-75205 Paris 13, France
Berrett, Katia
;
Couturier, Etienne
论文数: 0引用数: 0
h-index: 0
机构:
Univ Paris, CNRS, UMR 7057, Lab Matieres & Syst Complexes, F-75205 Paris 13, FranceUniv Paris, CNRS, Inst Jacques Monod, F-75205 Paris 13, France
Couturier, Etienne
;
Boudeoud, Arezki
论文数: 0引用数: 0
h-index: 0
机构:
Claude Bernard Lyon I, Ecole Normale Super Lyon, Reprod & Dev Plantes, Inra,Univ Lyon,CNRS, F-69364 Lyon 07, FranceUniv Paris, CNRS, Inst Jacques Monod, F-75205 Paris 13, France
机构:
Univ Calif San Diego, Dept Phys, La Jolla, CA 92093 USAUniv Calif San Diego, Dept Phys, La Jolla, CA 92093 USA
Erickson, David W.
;
Schink, Severin J.
论文数: 0引用数: 0
h-index: 0
机构:
Univ Calif San Diego, Dept Phys, La Jolla, CA 92093 USA
Tech Univ Munich, Phys Dept, Phys Complex Biosyst, D-85748 Garching, GermanyUniv Calif San Diego, Dept Phys, La Jolla, CA 92093 USA
Schink, Severin J.
;
Patsalo, Vadim
论文数: 0引用数: 0
h-index: 0
机构:
Scripps Res Inst, Dept Chem, Skaggs Inst Chem Biol, Dept Integrat Struct & Computat Biol, La Jolla, CA 92037 USAUniv Calif San Diego, Dept Phys, La Jolla, CA 92093 USA
Patsalo, Vadim
;
Williamson, James R.
论文数: 0引用数: 0
h-index: 0
机构:
Scripps Res Inst, Dept Chem, Skaggs Inst Chem Biol, Dept Integrat Struct & Computat Biol, La Jolla, CA 92037 USAUniv Calif San Diego, Dept Phys, La Jolla, CA 92093 USA
Williamson, James R.
;
Gerland, Ulrich
论文数: 0引用数: 0
h-index: 0
机构:
Tech Univ Munich, Phys Dept, Phys Complex Biosyst, D-85748 Garching, GermanyUniv Calif San Diego, Dept Phys, La Jolla, CA 92093 USA
Gerland, Ulrich
;
Hwa, Terence
论文数: 0引用数: 0
h-index: 0
机构:
Univ Calif San Diego, Dept Phys, La Jolla, CA 92093 USAUniv Calif San Diego, Dept Phys, La Jolla, CA 92093 USA