Evolutionary biclustering algorithms: an experimental study on microarray data

被引:11
作者
Maatouk, Ons [1 ,2 ]
Ayadi, Wassim [2 ,3 ]
Bouziri, Hend [1 ]
Duval, Beatrice [2 ]
机构
[1] Univ Tunis, LARODEC, 92 Blvd 9 Avril, Tunis 1007, Tunisia
[2] Univ Angers, LERIA, 2 Bd Lavoisier, F-49045 Angers, France
[3] Univ Tunis, LaTICE, 92 Blvd 9 Avril, Tunis 1007, Tunisia
关键词
Biclustering; Evolutionary algorithm; Genetic operators; Microarray data; Data mining; EXPRESSION DATA; SCATTER SEARCH; PATTERNS; IDENTIFICATION; OPTIMIZATION; CLUSTERS; MODULES; MODEL; TOOL;
D O I
10.1007/s00500-018-3394-4
中图分类号
TP18 [人工智能理论];
学科分类号
081104 ; 0812 ; 0835 ; 1405 ;
摘要
The extraction of knowledge from large biological data is among the main challenges of bioinformatics. Several data mining techniques have been proposed to extract data; in this work, we focus on biclustering which has grown considerably in recent years. Biclustering aims to extract a set of genes with similar behavior under a condition set. In this paper, we propose an evolutionary biclustering algorithm and we analyze its performance by varying its genetic components. Hence, several versions of the evolutionary biclustering algorithm are introduced. Further, an experimental study is achieved on two real microarray datasets and the results are compared to other state-of-the-art biclustering algorithms. This thorough study allows to retain the best combination of operators among the various experienced choices.
引用
收藏
页码:7671 / 7697
页数:27
相关论文
共 88 条
[1]   A new biclustering technique based on crossing minimization [J].
Abdullah, Ahsan ;
Hussain, Amir .
NEUROCOMPUTING, 2006, 69 (16-18) :1882-1896
[2]   Shifting and scaling patterns from gene expression data [J].
Aguilar-Ruiz, JS .
BIOINFORMATICS, 2005, 21 (20) :3840-3845
[3]   Shifting-and-Scaling Correlation Based Biclustering Algorithm [J].
Ahmed, Hasin Afzal ;
Mahanta, Priyakshi ;
Bhattacharyya, Dhruba Kumar ;
Kalita, Jugal Kumar .
IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS, 2014, 11 (06) :1239-1252
[4]  
Amna AR, 2017, P 4 INT C COMP APPL, P1, DOI [10.1109/CAIPT.2017.8320694, DOI 10.1109/CAIPT.2017.8320694]
[5]  
Gallo CA, 2009, LECT N BIOINFORMAT, V5676, P36, DOI 10.1007/978-3-642-03223-3_4
[6]  
[Anonymous], THESIS
[7]  
[Anonymous], INT J COMPUT APPL
[8]  
[Anonymous], 2004, GOTERMFINDER
[9]  
[Anonymous], 2003, A practical approach to microarray data analysis
[10]   A Supervised Biclustering Optimization Model for Feature Selection in Biomedical Dataset Classification [J].
Arikan, Saziye Deniz Oguz ;
Iyigun, Cem .
DATA MINING AND BIG DATA, DMBD 2016, 2016, 9714 :196-204