Molecular dynamics simulations of glyphosate in a DPPC lipid bilayer
被引:12
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作者:
Frigini, Ezequiel N.
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Univ Nacl San Luis, IMASL, Ejercito Los Andes 950,D5700HHW, San Luis, Argentina
Consejo Nacl Invest Cient & Tecn, Ejercito Los Andes 950,D5700HHW, San Luis, ArgentinaUniv Nacl San Luis, IMASL, Ejercito Los Andes 950,D5700HHW, San Luis, Argentina
Frigini, Ezequiel N.
[1
,2
]
Lopez Cascales, J. J.
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Univ Politecn Cartagena, Grp Bioinformat & Macromol BioMac, Area Quim Fis, Aulario 2,Campus Alfonso 13, Murcia 30203, SpainUniv Nacl San Luis, IMASL, Ejercito Los Andes 950,D5700HHW, San Luis, Argentina
Lopez Cascales, J. J.
[3
]
Porasso, Rodolfo D.
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Univ Nacl San Luis, IMASL, Ejercito Los Andes 950,D5700HHW, San Luis, Argentina
Consejo Nacl Invest Cient & Tecn, Ejercito Los Andes 950,D5700HHW, San Luis, ArgentinaUniv Nacl San Luis, IMASL, Ejercito Los Andes 950,D5700HHW, San Luis, Argentina
Porasso, Rodolfo D.
[1
,2
]
机构:
[1] Univ Nacl San Luis, IMASL, Ejercito Los Andes 950,D5700HHW, San Luis, Argentina
[2] Consejo Nacl Invest Cient & Tecn, Ejercito Los Andes 950,D5700HHW, San Luis, Argentina
[3] Univ Politecn Cartagena, Grp Bioinformat & Macromol BioMac, Area Quim Fis, Aulario 2,Campus Alfonso 13, Murcia 30203, Spain
Extensive molecular dynamics simulations have been performed to study the effect of glyphosate (in their neutral and charged forms, GLYP and GLYP(2-), respectively) on fully hydrated DiPalmitoylPhosphatidylCholine (DPPC) lipid bilayer. First, we calculated the free energy profile (using the Umbrella Sampling technique) for both states of charge of glyphosate. The minimum value for the free energy for GLYP is similar to-60 kJ mol(-1) located at z = +/- 1.7 nm (from the lipid bilayer center), and there is almost no maximum at the center of the lipid bilayer. By contrast, the minimum for GLYP(2-) is similar to-35 kJ mol(-1) located at z = +/- 1.4 nm (from the lipid bilayer center), and the maximum reaches similar to 35 kJ mol(-1) at the center of the lipid bilayer. Then, different lipid bilayer properties were analyzed for different glyphosate:lipid (G:L) ratios. The mean area per lipid was slightly affected, increasing only 5% (in the presence of glyphosate at high concentrations), which is in agreement with the slight decrease in deuterium order parameters. As for the thickness of the bilayer, it is observed that the state of charge produces opposite effects. On one hand, the neutral state produces an increase in the thickness of the lipid bilayer; on the other, the charged form produces a decrease in the thickness, which not depend linearly on the G:L ratios, either. The orientation of the DPPC head groups is practically unaffected throughout the range of the G:L ratios studied. Finally, the mobility of the lipids of the bilayer is strongly affected by the presence of glyphosate, considerably increasing its lateral diffusion coefficient noteworthy (one order of magnitude), with increasing G:L ratio.
机构:
Univ Nacl San Luis, Fac Quim Bioquim & Farm, Inst Matemat Aplicada San Luis, CONICET, RA-5700 San Luis, ArgentinaUniv Nacl San Luis, Inst Matemat Aplicada San Luis, CONICET, Fac Ciencias Matemat & Nat, RA-5700 San Luis, Argentina
Frigini, Ezequiel N.
Porasso, Rodolfo D.
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Univ Nacl San Luis, Inst Matemat Aplicada San Luis, CONICET, Fac Ciencias Matemat & Nat, RA-5700 San Luis, ArgentinaUniv Nacl San Luis, Inst Matemat Aplicada San Luis, CONICET, Fac Ciencias Matemat & Nat, RA-5700 San Luis, Argentina
机构:
Stockholm Univ, Dept Mat & Environm Chem, Div Phys Chem, SE-10691 Stockholm, SwedenStockholm Univ, Dept Mat & Environm Chem, Div Phys Chem, SE-10691 Stockholm, Sweden
Mojumdar, Enamul H.
Lyubartsev, Alexander P.
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Stockholm Univ, Dept Mat & Environm Chem, Div Phys Chem, SE-10691 Stockholm, SwedenStockholm Univ, Dept Mat & Environm Chem, Div Phys Chem, SE-10691 Stockholm, Sweden