MathSBML: a package for manipulating SBML-based biological models

被引：31

作者：

Shapiro, BE

Hucka, M

Finney, A

Doyle, J

机构：

[1] CALTECH, Jet Prop Lab, Pasadena, CA 91109 USA

[2] Univ Hertfordshire, Sci & Technol Res Ctr, Hatfield AL10 9AB, Herts, England

来源：

BIOINFORMATICS | 2004年 / 20卷 / 16期

关键词：

D O I：

10.1093/bioinformatics/bth271

中图分类号：

Q5 [生物化学];

学科分类号：

071010 ; 081704 ;

摘要：

MathSBML is a Mathematica package designed for manipulating Systems Biology Markup Language (SBML) models. It converts SBML models into Mathematica data structures and provides a platform for manipulating and evaluating these models. Once a model is read by MathSBML, it is fully compatible with standard Mathematica functions such as NDSolve (a differential-algebraic equations solver). MathSBML also provides an application programming interface for viewing, manipulating, running numerical simulations; exporting SBML models; and converting SBML models in to other formats, such as XPP, HTML and FORTRAN. By accessing the full breadth of Mathematica functionality, MathSBML is fully extensible to SBML models of any size or complexity.

引用

页码：2829 / 2831

页数：3

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