Enrichment of LOVD-USHbases with 152 USH2A Genotypes Defines an Extensive Mutational Spectrum and Highlights Missense Hotspots

被引:52
作者
Baux, David [1 ]
Blanchet, Catherine [2 ,3 ]
Hame, Christian [3 ]
Meunier, Isabelle [3 ]
Larrieu, Lise [1 ]
Faugere, Valerie [1 ]
Vache, Christel [1 ]
Castorina, Pierangela [4 ,5 ]
Puech, Bernard [6 ]
Bonneau, Dominique [7 ,8 ]
Malcolm, Sue [9 ]
Claustres, Mireille [1 ,10 ,11 ]
Roux, Anne-Francoise [1 ,10 ]
机构
[1] CHU Montpellier, Lab Genet Mol, F-34000 Montpellier, France
[2] CHU Montpellier, Serv ORL, F-34000 Montpellier, France
[3] CHU Montpellier, Ctr Natl Reference Malad Rares Affect Sensorielle, F-34000 Montpellier, France
[4] Fdn IRCCS Ca Granda Osped Maggiore Policlin, UOC Audiol, Milan, Italy
[5] Fdn IRCCS Ca Granda Osped Maggiore Policlin, UO Nefrol & Dialisi, Milan, Italy
[6] CHU Lille, Hop Roger Salengro Explorat Vis & Neuroophtalmol, F-59037 Lille, France
[7] CHU Angers, Serv Genet, F-49933 Angers, France
[8] UMR CNRS 6214 INSERM 771, F-49000 Angers, France
[9] UCL, Inst Child Hlth, London, England
[10] INSERM, U827, F-34000 Montpellier, France
[11] Univ Montpellier I, UFR Med, Lab Genet Mol, F-34000 Montpellier, France
关键词
usher syndrome; USH2A Usherin LSDB; Fibroneetin type III; Larninin 1EGF like; HAIR-CELLS; PROTEIN; GENE; USHERIN; IDENTIFICATION; DIAGNOSIS; VARIANTS; ISOFORM; LINKS; SCORE;
D O I
10.1002/humu.22608
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
Alterations of USH2 encoding are responsible for more than '7 ages Usher s syndrome type (USH2), a recessive disorder he loss and retinal degedes usherM isoform 5.202-amino-ai. d p with an exceptional a e extracellul nsisting notably of a Lan-limn Nteuninal domain and numer, inin EGFdike (LE) and Fibronectin type 111 (EN3) re ations o are scattere t ro t e gene ari private. Annotatitig these variants is theret uajor p o correctly assign pathogenicity. We have x sively genotyp d a novel cohort of 152 Usher patients arid ideritified 58 different mutations, of which 93 are nen ly d bed. Pool, g this new data with the existing pathogenic vart alread ed bases reveals several previously unappr ed of the mutational spectrum. 'We show that parts p a ikeh Aerate single amino acid variations-, hereas o hers ti ute pathogenic misserise hotspots. We have nd, rept-E and FN3 domains, a nonequal distributio the missense mutat that highlights some crucial positions iri usherin with pos sequerices for the assessment of the pathogenicity nu u ense variants identified in USH2A.
引用
收藏
页码:1179 / 1186
页数:8
相关论文
共 38 条
  • [21] Usherin is required for maintenance of retinal photoreceptors and normal development of cochlear hair cells
    Liu, Xiaoqing
    Bulgakov, Oleg V.
    Darrow, Keith N.
    Pawlyk, Basil
    Adamian, Michael
    Liberman, M. Charles
    Li, Tiansen
    [J]. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2007, 104 (11) : 4413 - 4418
  • [22] A novel Usher protein network at the periciliary reloading point between molecular transport machineries in vertebrate photoreceptor cells
    Maerker, Tina
    van Wijk, Erwin
    Overlack, Nora
    Kersten, Ferry F. J.
    McGee, JoAnn
    Goldmann, Tobias
    Sehn, Elisabeth
    Roepman, Ronald
    Walsh, Edward J.
    Kremer, Hannie
    Wolfrum, Uwe
    [J]. HUMAN MOLECULAR GENETICS, 2008, 17 (01) : 71 - 86
  • [23] Novel mutations in the long isoform of the USH2A gene in patients with Usher syndrome type II or non-syndromic retinitis pigmentosa
    McGee, Terri L.
    Seyedahmadi, Babak Jian
    Sweeney, Meredith O.
    Dryja, Thaddeus P.
    Berson, Eliot L.
    [J]. JOURNAL OF MEDICAL GENETICS, 2010, 47 (07) : 499 - 506
  • [24] Molecular characterization of the ankle-link complex in cochlear hair cells and its role in the hair bundle functioning
    Michalski, Nicolas
    Michel, Vincent
    Bahloul, Amel
    Lefevre, Gaelle
    Barral, Jeremie
    Yagi, Hideshi
    Chardenoux, Sebastien
    Weil, Dominique
    Martin, Pascal
    Hardelin, Jean-Pierre
    Sato, Makoto
    Petit, Christine
    [J]. JOURNAL OF NEUROSCIENCE, 2007, 27 (24) : 6478 - 6488
  • [25] SIFT: predicting amino acid changes that affect protein function
    Ng, PC
    Henikoff, S
    [J]. NUCLEIC ACIDS RESEARCH, 2003, 31 (13) : 3812 - 3814
  • [26] Scaffold protein harmonin (USH1C) provides molecular links between Usher syndrome type 1 and type 2
    Reiners, J
    van Wijk, E
    Märker, T
    Zimmermann, U
    Jürgens, K
    te Brinke, H
    Overlack, N
    Roepman, R
    Knipper, M
    Kremer, H
    Wolfrum, U
    [J]. HUMAN MOLECULAR GENETICS, 2005, 14 (24) : 3933 - 3943
  • [27] Predicting the functional impact of protein mutations: application to cancer genomics
    Reva, Boris
    Antipin, Yevgeniy
    Sander, Chris
    [J]. NUCLEIC ACIDS RESEARCH, 2011, 39 (17) : E118 - U85
  • [28] Four-Year Follow-up of Diagnostic Service in USH1 Patients
    Roux, Anne-Francoise
    Faugere, Valerie
    Vache, Christel
    Baux, David
    Besnard, Thomas
    Leonard, Susana
    Blanchet, Catherine
    Hamel, Christian
    Mondain, Michel
    Gilbert-Dussardier, Brigitte
    Edery, Patrick
    Lacombe, Didier
    Bonneau, Dominique
    Holder-Espinasse, Muriel
    Ambrosetti, Umberto
    Journel, Hubert
    David, Albert
    Lina-Granade, Genevieve
    Malcolm, Sue
    Claustres, Mireille
    [J]. INVESTIGATIVE OPHTHALMOLOGY & VISUAL SCIENCE, 2011, 52 (07) : 4063 - 4071
  • [29] Disease Course in Patients with Autosomal Recessive Retinitis Pigmentosa due to the USH2A Gene
    Sandberg, Michael A.
    Rosner, Bernard
    Weigel-DiFranco, Carol
    McGee, Terri L.
    Dryja, Thaddeus P.
    Berson, Eliot L.
    [J]. INVESTIGATIVE OPHTHALMOLOGY & VISUAL SCIENCE, 2008, 49 (12) : 5532 - 5539
  • [30] Comprehensive sequence analysis of nine Usher syndrome genes in the UK National Collaborative Usher Study
    Stabej, Polona Le Quesne
    Saihan, Zubin
    Rangesh, Nell
    Steele-Stallard, Heather B.
    Ambrose, John
    Coffey, Alison
    Emmerson, Jenny
    Haralambous, Elene
    Hughes, Yasmin
    Steel, Karen P.
    Luxon, Linda M.
    Webster, Andrew R.
    Bitner-Glindzicz, Maria
    [J]. JOURNAL OF MEDICAL GENETICS, 2012, 49 (01) : 27 - 36