Enrichment of LOVD-USHbases with 152 USH2A Genotypes Defines an Extensive Mutational Spectrum and Highlights Missense Hotspots

被引:53
作者
Baux, David [1 ]
Blanchet, Catherine [2 ,3 ]
Hame, Christian [3 ]
Meunier, Isabelle [3 ]
Larrieu, Lise [1 ]
Faugere, Valerie [1 ]
Vache, Christel [1 ]
Castorina, Pierangela [4 ,5 ]
Puech, Bernard [6 ]
Bonneau, Dominique [7 ,8 ]
Malcolm, Sue [9 ]
Claustres, Mireille [1 ,10 ,11 ]
Roux, Anne-Francoise [1 ,10 ]
机构
[1] CHU Montpellier, Lab Genet Mol, F-34000 Montpellier, France
[2] CHU Montpellier, Serv ORL, F-34000 Montpellier, France
[3] CHU Montpellier, Ctr Natl Reference Malad Rares Affect Sensorielle, F-34000 Montpellier, France
[4] Fdn IRCCS Ca Granda Osped Maggiore Policlin, UOC Audiol, Milan, Italy
[5] Fdn IRCCS Ca Granda Osped Maggiore Policlin, UO Nefrol & Dialisi, Milan, Italy
[6] CHU Lille, Hop Roger Salengro Explorat Vis & Neuroophtalmol, F-59037 Lille, France
[7] CHU Angers, Serv Genet, F-49933 Angers, France
[8] UMR CNRS 6214 INSERM 771, F-49000 Angers, France
[9] UCL, Inst Child Hlth, London, England
[10] INSERM, U827, F-34000 Montpellier, France
[11] Univ Montpellier I, UFR Med, Lab Genet Mol, F-34000 Montpellier, France
关键词
usher syndrome; USH2A Usherin LSDB; Fibroneetin type III; Larninin 1EGF like; HAIR-CELLS; PROTEIN; GENE; USHERIN; IDENTIFICATION; DIAGNOSIS; VARIANTS; ISOFORM; LINKS; SCORE;
D O I
10.1002/humu.22608
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
Alterations of USH2 encoding are responsible for more than '7 ages Usher s syndrome type (USH2), a recessive disorder he loss and retinal degedes usherM isoform 5.202-amino-ai. d p with an exceptional a e extracellul nsisting notably of a Lan-limn Nteuninal domain and numer, inin EGFdike (LE) and Fibronectin type 111 (EN3) re ations o are scattere t ro t e gene ari private. Annotatitig these variants is theret uajor p o correctly assign pathogenicity. We have x sively genotyp d a novel cohort of 152 Usher patients arid ideritified 58 different mutations, of which 93 are nen ly d bed. Pool, g this new data with the existing pathogenic vart alread ed bases reveals several previously unappr ed of the mutational spectrum. 'We show that parts p a ikeh Aerate single amino acid variations-, hereas o hers ti ute pathogenic misserise hotspots. We have nd, rept-E and FN3 domains, a nonequal distributio the missense mutat that highlights some crucial positions iri usherin with pos sequerices for the assessment of the pathogenicity nu u ense variants identified in USH2A.
引用
收藏
页码:1179 / 1186
页数:8
相关论文
共 38 条
[1]   Audiological findings in 100 USH2 patients [J].
Abadie, C. ;
Blanchet, C. ;
Baux, D. ;
Larrieu, L. ;
Besnard, T. ;
Ravel, P. ;
Biboulet, R. ;
Hamel, C. ;
Malcolm, S. ;
Mondain, M. ;
Claustres, M. ;
Roux, A-F .
CLINICAL GENETICS, 2012, 82 (05) :433-438
[2]   Usherin, the defective protein in Usher syndrome type IIA, is likely to be a component of interstereocilia ankle links in the inner ear sensory cells [J].
Adato, A ;
Lefèvre, G ;
Delprat, B ;
Michel, V ;
Michalski, N ;
Chardenoux, S ;
Weil, D ;
El-Amraoui, A ;
Petit, C .
HUMAN MOLECULAR GENETICS, 2005, 14 (24) :3921-3932
[3]   A method and server for predicting damaging missense mutations [J].
Adzhubei, Ivan A. ;
Schmidt, Steffen ;
Peshkin, Leonid ;
Ramensky, Vasily E. ;
Gerasimova, Anna ;
Bork, Peer ;
Kondrashov, Alexey S. ;
Sunyaev, Shamil R. .
NATURE METHODS, 2010, 7 (04) :248-249
[4]  
Baux D., 2013, INNER EAR DEV HEARIN, P159
[5]   Molecular and in sillico analyses of the full-length isoform of usherlin identify new pathogenic alleles in usher type II patients [J].
Baux, David ;
Larrieu, Lise ;
Blanchet, Catherine ;
Hamel, Christian ;
Ben Salah, Safouane ;
Vielle, Anne ;
Gilbert-Dussardier, Brigitte ;
Holder, Muriel ;
Calvas, Patrick ;
Philip, Nicole ;
Edery, Patrick ;
Bonneau, Dominique ;
Claustres, Mireille ;
Malcolm, Sue ;
Roux, Anne-Francoise .
HUMAN MUTATION, 2007, 28 (08) :781-789
[6]   Experience of targeted Usher exome sequencing as a clinical test [J].
Besnard, Thomas ;
Garcia-Garcia, Gema ;
Baux, David ;
Vache, Christel ;
Faugere, Valerie ;
Larrieu, Lise ;
Leonard, Susana ;
Millan, Jose M. ;
Malcolm, Sue ;
Claustres, Mireille ;
Roux, Anne-Francoise .
MOLECULAR GENETICS & GENOMIC MEDICINE, 2014, 2 (01) :30-43
[7]   Non-USH2A mutations in USH2 patients [J].
Besnard, Thomas ;
Vache, Christel ;
Baux, David ;
Larrieu, Lise ;
Abadie, Caroline ;
Blanchet, Catherine ;
Odent, Sylvie ;
Blanchet, Patricia ;
Calvas, Patrick ;
Hamel, Christian ;
Dollfus, Helene ;
Lina-Granade, Genevieve ;
Lespinasse, James ;
David, Albert ;
Isidor, Bertrand ;
Morin, Gilles ;
Malcolm, Sue ;
Tuffery-Giraud, Sylvie ;
Claustres, Mireille ;
Roux, Anne-Francoise .
HUMAN MUTATION, 2012, 33 (03) :504-510
[8]   A domain-specific usherin/collagen IV interaction may be required for stable integration into the basement membrane superstructure [J].
Bhattacharya, G ;
Kalluri, R ;
Orten, DJ ;
Kimberling, WJ ;
Cosgrove, D .
JOURNAL OF CELL SCIENCE, 2004, 117 (02) :233-242
[9]   Functional Annotations Improve the Predictive Score of Human Disease-Related Mutations in Proteins [J].
Calabrese, Remo ;
Capriotti, Emidio ;
Fariselli, Piero ;
Martelli, Pier Luigi ;
Casadio, Rita .
HUMAN MUTATION, 2009, 30 (08) :1237-1244
[10]   The Jalview Java']Java alignment editor [J].
Clamp, M ;
Cuff, J ;
Searle, SM ;
Barton, GJ .
BIOINFORMATICS, 2004, 20 (03) :426-427