Conformational-Design-Driven Discovery of EZM0414: A Selective, Potent SETD2 Inhibitor for Clinical Studies

被引:23
作者
Alford, Joshua S. [1 ]
Lampe, John W. [1 ]
Brach, Dorothy [1 ]
Chesworth, Richard [1 ]
Cosmopoulos, Kat [1 ]
Duncan, Kenneth W. [1 ,2 ]
Eckley, Sean T. [1 ]
Raimondi, Alejandra [1 ]
V. Riera, Thomas [1 ]
Shook, Brian [1 ]
Tang, Cuyue [1 ,3 ]
Totman, Jennifer [1 ]
Farrow, Neil A. [1 ]
机构
[1] Epizyme Inc, Cambridge, MA 02139 USA
[2] Accent Therapeut, 65 Hayden Ave, Lexington, MA 02421 USA
[3] Remix Therapeut, One Kendall Sq,Bldg 200, Cambridge, MA 02139 USA
关键词
Histone methyltransferase; SETD2; HISTONE H3; IDENTIFICATION; TARGETS;
D O I
10.1021/acsmedchemlett.2c00167
中图分类号
R914 [药物化学];
学科分类号
100701 ;
摘要
SETD2, a lysine N-methyltransferase, is a histone methyltransferase that plays an important role in various cellular processes and was identified as a target of interest in multiple myeloma that features a t(4,14) translocation. We recently reported the discovery of a novel small-molecule SETD2 inhibitor tool compound that is suitable for preclinical studies. Herein we describe the conformational-design-driven evolution of the advanced chemistry lead, which resulted in compounds appropriate for clinical evaluation. Further optimization of this chemical series led to the discovery of EZM0414, which is a potent, selective, and orally bioavailable inhibitor of SETD2 with good pharmacokinetic properties and robust pharmacodynamic activity in a mouse xenograft model.
引用
收藏
页码:1137 / 1143
页数:7
相关论文
共 20 条
[1]  
clinicaltrials.gov, STUD SUBJ REL REFR M
[2]   Dynamic histone H3 methylation during gene induction: HYPB/Setd2 mediates all H3K36 trimethylation [J].
Edmunds, John W. ;
Mahadevan, Louis C. ;
Clayton, Alison L. .
EMBO JOURNAL, 2008, 27 (02) :406-420
[3]   High-Resolution CRISPR Screens Reveal Fitness Genes and Genotype-Specific Cancer Liabilities [J].
Hart, Traver ;
Chandrashekhar, Megha ;
Aregger, Michael ;
Steinhart, Zachary ;
Brown, Kevin R. ;
MacLeod, Graham ;
Mis, Monika ;
Zimmermann, Michal ;
Fradet-Turcotte, Amelie ;
Sun, Song ;
Mero, Patricia ;
Dirks, Peter ;
Sidhu, Sachdev ;
Roth, Frederick P. ;
Rissland, Olivia S. ;
Durocher, Daniel ;
Angers, Stephane ;
Moffat, Jason .
CELL, 2015, 163 (06) :1515-1526
[4]   3D Molecular Descriptors Important for Clinical Success [J].
Kombo, David C. ;
Tallapragada, Kartik ;
Jain, Rachit ;
Chewning, Joseph ;
Mazurov, Anatoly A. ;
Speake, Jason D. ;
Hauser, Terry A. ;
Toler, Steve .
JOURNAL OF CHEMICAL INFORMATION AND MODELING, 2013, 53 (02) :327-342
[5]   NSD2 Links Dimethylation of Histone H3 at Lysine 36 to Oncogenic Programming [J].
Kuo, Alex J. ;
Cheung, Peggie ;
Chen, Kaifu ;
Zee, Barry M. ;
Kioi, Mitomu ;
Lauring, Josh ;
Xi, Yuanxin ;
Park, Ben Ho ;
Shi, Xiaobing ;
Garcia, Benjamin A. ;
Li, Wei ;
Gozani, Or .
MOLECULAR CELL, 2011, 44 (04) :609-620
[6]   Discovery of a First-in-Class Inhibitor of the Histone Methyltransferase SETD2 Suitable for Preclinical Studies [J].
Lampe, John W. ;
Alford, Joshua S. ;
Boriak-Sjodin, P. Ann ;
Brach, Dorothy ;
Cosmopoulos, Kat ;
Duncan, Kenneth W. ;
Eckley, Sean T. ;
Foley, Megan A. ;
Harvey, Darren M. ;
Motwani, Vinny ;
Munchhof, Michael J. ;
Raimondi, Alejandra ;
Riera, Thomas, V ;
Tang, Cuyue ;
Thomenius, Michael J. ;
Totman, Jennifer ;
Farrow, Neil A. .
ACS MEDICINAL CHEMISTRY LETTERS, 2021, 12 (10) :1539-1545
[7]   SETD2: an epigenetic modifier with tumor suppressor functionality [J].
Li, Jun ;
Duns, Gerben ;
Westers, Helga ;
Sijmons, Rolf ;
van den Berg, Anke ;
Kok, Klaas .
ONCOTARGET, 2016, 7 (31) :50719-50734
[8]   SETD2 alterations impair DNA damage recognition and lead to resistance to chemotherapy in leukemia [J].
Mar, Brenton G. ;
Chu, S. Haihua ;
Kahn, Josephine D. ;
Krivtsov, Andrei V. ;
Koche, Richard ;
Castellano, Cecilia A. ;
Kotlier, Jacob L. ;
Zon, Rebecca L. ;
McConkey, Marie E. ;
Chabon, Jonathan ;
Chappell, Ryan ;
Grauman, Peter V. ;
Hsieh, James J. ;
Armstrong, Scott A. ;
Ebert, Benjamin L. .
BLOOD, 2017, 130 (24) :2631-2641
[9]   Pharmacological Promiscuity: Dependence on Compound Properties and Target Specificity in a Set of Recent Roche Compounds [J].
Peters, Jens-Uwe ;
Schnider, Patrick ;
Mattei, Patrizio ;
Kansy, Manfred .
CHEMMEDCHEM, 2009, 4 (04) :680-686
[10]   Genetic and Functional Drivers of Diffuse Large B Cell Lymphoma [J].
Reddy, Anupama ;
Zhang, Jenny ;
Davis, Nicholas S. ;
Moffitt, Andrea B. ;
Love, Cassandra L. ;
Waldrop, Alexander ;
Leppa, Sirpa ;
Pasanen, Annika ;
Meriranta, Leo ;
Karjalainen-Lindsberg, Marja-Liisa ;
Norgaard, Peter ;
Pedersen, Mette ;
Gang, Anne O. ;
Hogdall, Estrid ;
Heavican, Tayla B. ;
Lone, Waseem ;
Iqbal, Javeed ;
Qin, Qiu ;
Li, Guojie ;
Kim, So Young ;
Healy, Jane ;
Richards, Kristy L. ;
Fedoriw, Yuri ;
Bernal-Mizrachi, Leon ;
Koff, Jean L. ;
Staton, Ashley D. ;
Flowers, Christopher R. ;
Paltiel, Ora ;
Goldschmidt, Neta ;
Calaminici, Maria ;
Clear, Andrew ;
Gribben, John ;
Nguyen, Evelyn ;
Czader, Magdalena B. ;
Ondrejka, Sarah L. ;
Collie, Angela ;
Hsi, Eric D. ;
Tse, Eric ;
Au-Yeung, Rex K. H. ;
Kwong, Yok-Lam ;
Srivastava, Gopesh ;
Choi, William W. L. ;
Evens, Andrew M. ;
Pilichowska, Monika ;
Sengar, Manju ;
Reddy, Nishitha ;
Li, Shaoying ;
Chadburn, Amy ;
Gordon, Leo I. ;
Jaffe, Elaine S. .
CELL, 2017, 171 (02) :481-+