Detection of liver cirrhosis in standard T2-weighted MRI using deep transfer learning

被引:29
作者
Nowak, Sebastian [1 ]
Mesropyan, Narine [1 ]
Faron, Anton [1 ]
Block, Wolfgang [1 ]
Reuter, Martin [2 ,3 ,4 ]
Attenberger, Ulrike, I [1 ]
Luetkens, Julian A. [1 ]
Sprinkart, Alois M. [1 ]
机构
[1] Univ Hosp Bonn, Quantitat Imaging Lab Bonn QILaB, Dept Diagnost & Intervent Radiol, Venusberg Campus 1, D-53127 Bonn, Germany
[2] German Ctr Neurodegenerat Dis DZNE, Image Anal, Bonn, Germany
[3] Massachusetts Gen Hosp, AA Martinos Ctr Biomed Imaging, Boston, MA 02114 USA
[4] Harvard Med Sch, Dept Radiol, Boston, MA 02115 USA
关键词
Deep learning; Neural networks; computer; Magnetic resonance imaging; Liver cirrhosis; CONVOLUTIONAL NEURAL-NETWORKS; FIBROSIS; DIAGNOSIS;
D O I
10.1007/s00330-021-07858-1
中图分类号
R8 [特种医学]; R445 [影像诊断学];
学科分类号
1002 ; 100207 ; 1009 ;
摘要
Objectives To investigate the diagnostic performance of deep transfer learning (DTL) to detect liver cirrhosis from clinical MRI. Methods The dataset for this retrospective analysis consisted of 713 (343 female) patients who underwent liver MRI between 2017 and 2019. In total, 553 of these subjects had a confirmed diagnosis of liver cirrhosis, while the remainder had no history of liver disease. T2-weighted MRI slices at the level of the caudate lobe were manually exported for DTL analysis. Data were randomly split into training, validation, and test sets (70%/15%/15%). A ResNet50 convolutional neural network (CNN) pre-trained on the ImageNet archive was used for cirrhosis detection with and without upstream liver segmentation. Classification performance for detection of liver cirrhosis was compared to two radiologists with different levels of experience (4(th)-year resident, board-certified radiologist). Segmentation was performed using a U-Net architecture built on a pre-trained ResNet34 encoder. Differences in classification accuracy were assessed by the chi(2)-test. Results Dice coefficients for automatic segmentation were above 0.98 for both validation and test data. The classification accuracy of liver cirrhosis on validation (vACC) and test (tACC) data for the DTL pipeline with upstream liver segmentation (vACC = 0.99, tACC = 0.96) was significantly higher compared to the resident (vACC = 0.88, p < 0.01; tACC = 0.91, p = 0.01) and to the board-certified radiologist (vACC = 0.96, p < 0.01; tACC = 0.90, p < 0.01). Conclusion This proof-of-principle study demonstrates the potential of DTL for detecting cirrhosis based on standard T2-weighted MRI. The presented method for image-based diagnosis of liver cirrhosis demonstrated expert-level classification accuracy.
引用
收藏
页码:8807 / 8815
页数:9
相关论文
共 33 条
  • [1] Brodersen Kay H., 2010, Proceedings of the 2010 20th International Conference on Pattern Recognition (ICPR 2010), P3121, DOI 10.1109/ICPR.2010.764
  • [2] Brown JJ, 1997, RADIOLOGY, V202, P1
  • [3] Influence of MRI acquisition protocols and image intensity normalization methods on texture classification
    Collewet, G
    Strzelecki, M
    Mariette, F
    [J]. MAGNETIC RESONANCE IMAGING, 2004, 22 (01) : 81 - 91
  • [4] FatSegNet: A fully automated deep learning pipeline for adipose tissue segmentation on abdominal dixon MRI
    Estrada, Santiago
    Lu, Ran
    Conjeti, Sailesh
    Orozco-Ruiz, Ximena
    Panos-Willuhn, Joana
    Breteler, Monique M. B.
    Reuter, Martin
    [J]. MAGNETIC RESONANCE IN MEDICINE, 2020, 83 (04) : 1471 - 1483
  • [5] Deep Residual Learning for Image Recognition
    He, Kaiming
    Zhang, Xiangyu
    Ren, Shaoqing
    Sun, Jian
    [J]. 2016 IEEE CONFERENCE ON COMPUTER VISION AND PATTERN RECOGNITION (CVPR), 2016, : 770 - 778
  • [6] FastSurfer - A fast and accurate deep learning based neuroimaging pipeline
    Henschel, Leonie
    Conjeti, Sailesh
    Estrada, Santiago
    Diers, Kersten
    Fischl, Bruce
    Reuter, Martin
    [J]. NEUROIMAGE, 2020, 219
  • [7] Texture-Based Classification of Liver Fibrosis Using MRI
    House, Michael J.
    Bangma, Sander J.
    Thomas, Mervyn
    Gan, Eng K.
    Ayonrinde, Oyekoya T.
    Adams, Leon A.
    Olynyk, John K.
    St Pierre, Tim G.
    [J]. JOURNAL OF MAGNETIC RESONANCE IMAGING, 2015, 41 (02) : 322 - 328
  • [8] Fastai: A Layered API for Deep Learning
    Howard, Jeremy
    Gugger, Sylvain
    [J]. INFORMATION, 2020, 11 (02)
  • [9] Do Better ImageNet Models Transfer Better?
    Kornblith, Simon
    Shlens, Jonathon
    Le, Quoc V.
    [J]. 2019 IEEE/CVF CONFERENCE ON COMPUTER VISION AND PATTERN RECOGNITION (CVPR 2019), 2019, : 2656 - 2666
  • [10] ImageNet Classification with Deep Convolutional Neural Networks
    Krizhevsky, Alex
    Sutskever, Ilya
    Hinton, Geoffrey E.
    [J]. COMMUNICATIONS OF THE ACM, 2017, 60 (06) : 84 - 90