Draft Genome Sequence of Lactococcus lactis Subsp. cremoris WA2-67: A Promising Nisin-Producing Probiotic Strain Isolated from the Rearing Environment of a Spanish Rainbow Trout (Oncorhynchus mykiss, Walbaum) Farm

被引:15
作者
Feito, Javier [1 ]
Contente, Diogo [1 ]
Ponce-Alonso, Manuel [2 ,3 ]
Diaz-Formoso, Lara [1 ]
Araujo, Carlos [1 ]
Pena, Nuria [1 ]
Borrero, Juan [1 ]
Gomez-Sala, Beatriz [4 ,5 ]
del Campo, Rosa [2 ,3 ]
Munoz-Atienza, Estefania [1 ]
Hernandez, Pablo E. [1 ]
Cintas, Luis M. [1 ]
机构
[1] Univ Complutense Madrid, Fac Vet, Secc Departamental Nutr & Ciencia Los Alimentos, Grp Seguridad & Calidad Los Alimentos Bacterias L, Puerta Hierro S-N, Madrid 28040, Spain
[2] Hosp Univ Ramon y Cajal, Serv Microbiol, Km 9,100, Madrid 28034, Spain
[3] Inst Ramon y Cajal Invest Sanitaria IRYCIS, Km 9,100, Madrid 28034, Spain
[4] Univ Coll Cork, APC Microbiome Ireland, Cork T12 K8AF, Ireland
[5] Teagasc Food Res Ctr, Moorepk, Fermoy P61 C996, Cork, Ireland
关键词
aquaculture; probiotics; lactic acid bacteria; bacteriocins; nisin Z; DIGESTIVE ENZYME-ACTIVITIES; GROWTH-PERFORMANCE; SUPPLEMENTATION; AQUACULTURE; BACTERIOCIN; ANNOTATION; MICROBIOTA; DISEASE; HEALTH; GENES;
D O I
10.3390/microorganisms10030521
中图分类号
Q93 [微生物学];
学科分类号
071005 ; 100705 ;
摘要
Probiotics are a viable alternative to traditional chemotherapy agents to control infectious diseases in aquaculture. In this regard, Lactococcus lactis subsp. cremoris WA2-67 has previously demonstrated several probiotic features, such as a strong antimicrobial activity against ichthyopathogens, survival in freshwater, resistance to fish bile and low pH, and hydrophobicity. The aim of this manuscript is an in silico analysis of the whole-genome sequence (WGS) of this strain to gain deeper insights into its probiotic properties and their genetic basis. Genomic DNA was purified, and libraries prepared for Illumina sequencing. After trimming and assembly, resulting contigs were subjected to bioinformatic analyses. The draft genome of L. cremoris WA2-67 consists of 30 contigs (2,573,139 bp), and a total number of 2493 coding DNA sequences (CDSs). Via in silico analysis, the bacteriocinogenic genetic clusters encoding the lantibiotic nisin Z (NisZ) and two new bacteriocins were identified, in addition to several probiotic traits, such as the production of vitamins, amino acids, adhesion/aggregation, and stress resistance factors, as well as the absence of transferable antibiotic resistance determinants and genes encoding detrimental enzymatic activities and virulence factors. These results unveil diverse beneficial properties that support the use of L. cremoris WA2-67 as a probiotic for aquaculture.
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页数:14
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