Coding-Complete Genome Sequences and Mutation Profiles of Nine SARS-CoV-2 Strains Detected from COVID-19 Patients in Bangladesh

被引：9

作者：

Adnan, Nihad ^{[1
,2
]}

Khondoker, Mohib Ullah ^{[2
,3
,4
]}

Rahman, M. Shaminur ^{[5
]}

Ahmed, M. Firoz ^{[1
]}

Sharmin, Shahana ^{[6
]}

Sharif, Nadim ^{[1
]}

Azmuda, Nafisa ^{[1
]}

Akter, Salma ^{[1
]}

Nahar, Shamsun ^{[1
]}

Mou, Taslin Jahan ^{[1
]}

Marzan, Mahfuza ^{[1
]}

Liza, Syeda Moriam ^{[1
]}

Jahan, Nowshin ^{[2
]}

Ali, Tamanna ^{[2
]}

Khandker, Shahad Saif ^{[2
]}

Jamiruddin, Maha ^{[2
]}

Chaity, Mousumi Akter ^{[2
]}

Caller, Laura Grace ^{[7
]}

Haq, M. Ahsanul ^{[2
]}

Jamiruddin, Mohd Raeed ^{[2
,6
]}

机构：

[1] Jahangirnagar Univ, Dept Microbiol, Dhaka, Bangladesh

[2] Gonoshasthaya RNA Mol Diagnost & Res Ctr, Dhaka, Bangladesh

[3] Gonoshasthaya Samaj Vitt Med Coll, Dhaka, Bangladesh

[4] Gono Bishwabidyalay, Ctr Multidisciplinary Res, Dhaka, Bangladesh

[5] Univ Dhaka, Dept Microbiol, Dhaka, Bangladesh

[6] BRAC Univ, Dept Pharm, Dhaka, Bangladesh

[7] Univ Cambridge, Dept Pathol, Cambridge, England

来源：

MICROBIOLOGY RESOURCE ANNOUNCEMENTS | 2021年 / 10卷 / 10期

关键词：

D O I：

10.1128/MRA.00124-21

中图分类号：

Q93 [微生物学];

学科分类号：

071005 ; 100705 ;

摘要：

Here, we report the coding-complete genome sequences of nine clinical severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) variants and their mutations. The samples were collected from nine Bangladeshi coronavirus disease 2019 (COVID-19) patients. We have identified the E484K escape mutation and the S359T mutation within the spike protein coding region of the sequenced genomes.

引用

页数：3

共 10 条

[1]

Barcenas Morales G., 2021, NATURE, DOI DOI 10.1038/S41586-021-03412-7

[2] Data, disease and diplomacy: GISAID's innovative contribution to global health [J].

Elbe, Stefan ;

Buckland-Merrett, Gemma .

GLOBAL CHALLENGES, 2017, 1 (01) :33-46

[3] bio-samtools 2: a package for analysis and visualization of sequence and alignment data with SAMtools in Ruby [J].

Etherington, Graham J. ;

Ramirez-Gonzalez, Ricardo H. ;

MacLean, Dan .

BIOINFORMATICS, 2015, 31 (15) :2565-2567

[4]

Goyal A, 2017, Open journal of genetics, V7, P9, DOI [10.4236/ojgen.2017, DOI 10.4236/OJGEN.2017, DOI 10.4236/OJGEN.2017.71002]

[5] Variant analysis of SARS-CoV-2 genomes [J].

Koyama, Takahiko ;

Platt, Daniel ;

Parida, Laxmi .

BULLETIN OF THE WORLD HEALTH ORGANIZATION, 2020, 98 (07) :495-504

[6] The Sequence Alignment/Map format and SAMtools [J].

Li, Heng ;

Handsaker, Bob ;

Wysoker, Alec ;

Fennell, Tim ;

Ruan, Jue ;

Homer, Nils ;

Marth, Gabor ;

Abecasis, Goncalo ;

Durbin, Richard .

BIOINFORMATICS, 2009, 25 (16) :2078-2079

[7]

Seeman T, 2015, SNIPPY RAPID HAPLOID

[8] Discovery and Genomic Characterization of a 382-Nucleotide Deletion in ORF7b and ORF8 during the Early Evolution of SARS-CoV-2 [J].

Su, Yvonne C. F. ;

Anderson, Danielle E. ;

Young, Barnaby E. ;

Linster, Martin ;

Zhu, Feng ;

Jayakumar, Jayanthi ;

Zhuang, Yan ;

Kalimuddin, Shirin ;

Low, Jenny G. H. ;

Tan, Chee Wah ;

Chia, Wan Ni ;

Mak, Tze Minn ;

Octavia, Sophie ;

Chavatte, Jean-Marc ;

Lee, Raphael T. C. ;

Pada, Surinder ;

Tan, Seow Yen ;

Sun, Louisa ;

Yan, Gabriel Z. ;

Maurer-Stroh, Sebastian ;

Mendenhall, Ian H. ;

Leo, Yee-Sin ;

Lye, David Chien ;

Wang, Lin-Fa ;

Smith, Gavin J. D. .

MBIO, 2020, 11 (04) :1-9

[9] Detection of a SARS-CoV-2 variant of concern in South Africa [J].

Tegally, Houriiyah ;

Wilkinson, Eduan ;

Giovanetti, Marta ;

Iranzadeh, Arash ;

Fonseca, Vagner ;

Giandhari, Jennifer ;

Doolabh, Deelan ;

Pillay, Sureshnee ;

San, Emmanuel James ;

Msomi, Nokukhanya ;

Mlisana, Koleka ;

von Gottberg, Anne ;

Walaza, Sibongile ;

Allam, Mushal ;

Ismail, Arshad ;

Mohale, Thabo ;

Glass, Allison J. ;

Engelbrecht, Susan ;

Van Zyl, Gert ;

Preiser, Wolfgang ;

Petruccione, Francesco ;

Sigal, Alex ;

Hardie, Diana ;

Marais, Gert ;

Hsiao, Nei-Yuan ;

Korsman, Stephen ;

Davies, Mary-Ann ;

Tyers, Lynn ;

Mudau, Innocent ;

York, Denis ;

Maslo, Caroline ;

Goedhals, Dominique ;

Abrahams, Shareef ;

Laguda-Akingba, Oluwakemi ;

Alisoltani-Dehkordi, Arghavan ;

Godzik, Adam ;

Wibmer, Constantinos Kurt ;

Sewell, Bryan Trevor ;

Lourenco, Jose ;

Alcantara, Luiz Carlos Junior ;

Pond, Sergei L. Kosakovsky ;

Weaver, Steven ;

Martin, Darren ;

Lessells, Richard J. ;

Bhiman, Jinal N. ;

Williamson, Carolyn ;

de Oliveira, Tulio .

NATURE, 2021, 592 (7854) :438-+

[10]

World Health Organisation [WHO], 2020, WHO Timeline-COVID-19

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