Unusual bond formation in aspartic protease inhibitors:: A theoretical study

被引:23
|
作者
Pilme, Julien [1 ]
Berthoumieux, Helene [1 ]
Robert, Vincent [1 ]
Fleurat-Lessard, Paul [1 ]
机构
[1] Ecole Normale Super Lyon, UMR CNRS 5182, Chim Lab, F-69364 Lyon 07, France
关键词
ab initio calculations; chemical bonding; density functional calculations; ELF (electron localization function); protease inhibitors;
D O I
10.1002/chem.200601250
中图分类号
O6 [化学];
学科分类号
0703 ;
摘要
The origin of the formation of the weak bond N vertical bar center dot center dot center dot C=O involved in an original class of aspartic protease inhibitors was investigated by means of the electron localization function (ELF) and explicitly correlated wave-function (MRCI) analysis. The distance between the electrophilic C and the nucleophilic N centers appears to be controlled directly by the polarity and proticity of the medium. In light of these investigations, an unusual dative N-C bonding picture was characterized. Formation of this bond is driven by the enhancement of the ionic contribution C+-O- induced mainly by the polarization effect of the near N lone pair, and to a lesser extent by a weak charge delocalization N -> CO. Although the main role of the solvating environment is to stabilize the ionic configuration, the protic solvent can enhance the C+-O- configuration through a slight but cumulative charge transfer towards water molecules in the short N-C distance regime. Our revisited bond scheme suggests the possible tuning of the N-CO interaction in the design of specific inhibitors.
引用
收藏
页码:5388 / 5393
页数:6
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