COVIDNearTerm: A simple method to forecast COVID-19 hospitalizations

被引:4
作者
Olshen, Adam B. [1 ,2 ]
Garcia, Ariadna [3 ]
Kapphahn, Kristopher, I [3 ]
Weng, Yingjie [3 ]
Wesson, Paul D. [1 ]
Rutherford, George W. [1 ,5 ]
Gonen, Mithat [6 ]
Desai, Manisha [3 ]
Vargo, Jason [4 ]
Pugliese, John A. [4 ]
Crow, David [4 ]
机构
[1] Univ Calif San Francisco, Dept Epidemiol & Biostat, San Francisco, CA 94158 USA
[2] Univ Calif San Francisco, HeEen Diller Family Comprehens Canc Ctr, San Francisco, CA 94158 USA
[3] Stanford Univ, Dept Med, Quantitat Sci Unit, Sch Med, Stanford, CA 94305 USA
[4] Calif Dept Publ Hlth, Sacramento, CA USA
[5] Univ Calif San Francisco, Inst Global Hlth Sci, San Francisco, CA 94158 USA
[6] Mem Sloan Kettering Canc Ctr, Dept Epidemiol & Biostat, New York, NY 10021 USA
关键词
COVID-19; forecasting; hospitalization; prediction; SARS-CoV-2;
D O I
10.1017/cts.2022.389
中图分类号
R-3 [医学研究方法]; R3 [基础医学];
学科分类号
1001 ;
摘要
Introduction: COVID-19 has caused tremendous death and suffering since it first emerged in 2019. Soon after its emergence, models were developed to help predict the course of various disease metrics, and these models have been relied upon to help guide public health policy. Methods: Here we present a method called COVIDNearTerm to "forecast" hospitalizations in the short term, two to four weeks from the time of prediction. COVIDNearTerm is based on an autoregressive model and utilizes a parametric bootstrap approach to make predictions. It is easy to use as it requires only previous hospitalization data, and there is an open-source R package that implements the algorithm. We evaluated COVIDNearTerm on San Francisco Bay Area hospitalizations and compared it to models from the California COVID Assessment Tool (CalCAT). Results: We found that COVIDNearTerm predictions were more accurate than the CalCAT ensemble predictions for all comparisons and any CalCAT component for a majority of comparisons. For instance, at the county level our 14-day hospitalization median absolute percentage errors ranged from 16 to 36%. For those same comparisons, the CalCAT ensemble errors were between 30 and 59%. Conclusion: COVIDNearTerm is a simple and useful tool for predicting near-term COVID-19 hospitalizations.
引用
收藏
页数:8
相关论文
共 26 条
[1]   Predicting the incidence of COVID-19 using data mining [J].
Ahouz, Fatemeh ;
Golabpour, Amin .
BMC PUBLIC HEALTH, 2021, 21 (01)
[2]   Long COVID in a prospective cohort of home-isolated patients [J].
Blomberg, Bjorn ;
Mohn, Kristin Greve-Isdahl ;
Brokstad, Karl Albert ;
Zhou, Fan ;
Linchausen, Dagrun Waag ;
Hansen, Bent-Are ;
Lartey, Sarah ;
Onyango, Therese Bredholt ;
Kuwelker, Kanika ;
Saevik, Marianne ;
Bartsch, Hauke ;
Tondel, Camilla ;
Kittang, Bard Reiakvam ;
Cox, Rebecca Jane ;
Langeland, Nina .
NATURE MEDICINE, 2021, 27 (09) :1607-+
[3]   Unreliable predictions about COVID-19 infections and hospitalizations make people worry: The case of Italy [J].
Divino, Fabio ;
Ciccozzi, Massimo ;
Farcomeni, Alessio ;
Jona-Lasinio, Giovanna ;
Lovison, Gianfranco ;
Maruotti, Antonello .
JOURNAL OF MEDICAL VIROLOGY, 2022, 94 (01) :26-28
[4]   Commentary on Ferguson, et al., "Impact of Non-pharmaceutical Interventions (NPIs) to Reduce COVID-19 Mortality and Healthcare Demand" [J].
Eubank, S. ;
Eckstrand, I ;
Lewis, B. ;
Venkatramanan, S. ;
Marathe, M. ;
Barrett, C. L. .
BULLETIN OF MATHEMATICAL BIOLOGY, 2020, 82 (04)
[5]   Time between Symptom Onset, Hospitalisation and Recovery or Death: Statistical Analysis of Belgian COVID-19 Patients [J].
Faes, Christel ;
Abrams, Steven ;
Van Beckhoven, Dominique ;
Meyfroidt, Geert ;
Vlieghe, Erika ;
Hens, Niel .
INTERNATIONAL JOURNAL OF ENVIRONMENTAL RESEARCH AND PUBLIC HEALTH, 2020, 17 (20) :1-18
[6]   Predicting regional COVID-19 hospital admissions in Sweden using mobility data [J].
Gerlee, Philip ;
Karlsson, Julia ;
Fritzell, Ingrid ;
Brezicka, Thomas ;
Spreco, Armin ;
Timpka, Toomas ;
Joud, Anna ;
Lundh, Torbjorn .
SCIENTIFIC REPORTS, 2021, 11 (01)
[7]   COVID-19: Short-term forecast of ICU beds in times of crisis [J].
Goic, Marcel ;
Bozanic-Leal, Mirko S. ;
Badal, Magdalena ;
Basso, Leonardo J. .
PLOS ONE, 2021, 16 (01)
[8]   Risk Assessment and Prediction of COVID-19 Based on Epidemiological Data From Spatiotemporal Geography [J].
He, Xiong ;
Zhou, Chunshan ;
Wang, Yuqu ;
Yuan, Xiaodie .
FRONTIERS IN ENVIRONMENTAL SCIENCE, 2021, 9
[9]   Risk prediction of covid-19 related death and hospital admission in adults after covid-19 vaccination: national prospective cohort study [J].
Hippisley-Cox, Julia ;
Coupland, Carol A. C. ;
Mehta, Nisha ;
Keogh, Ruth H. ;
Diaz-Ordaz, Karla ;
Khunti, Kamlesh ;
Lyons, Ronan A. ;
Kee, Frank ;
Sheikh, Aziz ;
Rahman, Shamim ;
Valabhji, Jonathan ;
Harrison, Ewen M. ;
Sellen, Peter ;
Haq, Nazmus ;
Semple, Malcolm G. ;
Johnson, Peter W. M. ;
Hayward, Andrew ;
Nguyen-Van-Tam, Jonathan S. .
BMJ-BRITISH MEDICAL JOURNAL, 2021, 374
[10]  
Inst. for Health Metrics COVID-19 Forecasting Team, 2020, NAT MED, V94, P94