Breast cancer heterogeneity through the lens of single-cell analysis and spatial pathologies

被引:27
作者
Zhao, Na [1 ]
Rosen, Jeffrey M. [1 ]
机构
[1] Baylor Coll Med, Dept Mol & Cellular Biol, Houston, TX 77030 USA
关键词
Breast cancer; Tumor heterogeneity; Single-cell; Spatial pathology; Tumor microenvironment; MAMMARY-GLAND DEVELOPMENT; MASS CYTOMETRY; INTRATUMOR HETEROGENEITY; GENE-EXPRESSION; IDENTIFIES HETEROGENEITY; EVOLUTION; THERAPY; IMMUNE; REVEALS; SEQ;
D O I
10.1016/j.semcancer.2021.07.010
中图分类号
R73 [肿瘤学];
学科分类号
100214 ;
摘要
Breast cancer ecosystems are composed of complex cell types, including tumor, stromal and immune cells, each of which can assume diverse phenotypes. Both the heterogeneous composition and spatially distinct tumor microenvironment impact breast cancer progression, treatment response and therapeutic resistance. Thus, a deeper understanding of breast cancer heterogeneity may help facilitate the development of novel therapies and improve outcomes for patients. The advent of paradigm shifting single-cell analysis and spatial pathologies allows for a comprehensive analysis of the tumor ecosystem as well as the interactions between its components at unprecedented resolution. In this review, we discuss the insights gained through single-cell analysis and spatial pathologies on breast cancer heterogeneity.
引用
收藏
页码:3 / 10
页数:8
相关论文
共 97 条
[1]   Imaging mass cytometry and multiplatform genomics define the phenogenomic landscape of breast cancer [J].
Ali, H. Raza ;
Jackson, Hartland W. ;
Zanotelli, Vito R. T. ;
Danenberg, Esther ;
Fischer, Jana R. ;
Bardwell, Helen ;
Provenzano, Elena ;
Rueda, Oscar M. ;
Chin, Suet-Feung ;
Aparicio, Samuel ;
Caldas, Carlos ;
Bodenmiller, Bernd .
NATURE CANCER, 2020, 1 (02) :163-+
[2]   Genome-driven integrated classification of breast cancer validated in over 7,500 samples [J].
Ali, H. Raza ;
Rueda, Oscar M. ;
Chin, Suet-Feung ;
Curtis, Christina ;
Dunning, Mark J. ;
Aparicio, Samuel A. J. R. ;
Caldas, Carlos .
GENOME BIOLOGY, 2014, 15 (08)
[3]   Estrogen and Progesterone Receptor Testing in Breast Cancer: ASCO/CAP Guideline Update [J].
Allison, Kimberly H. ;
Hammond, M. Elizabeth H. ;
Dowsett, Mitchell ;
McKernin, Shannon E. ;
Carey, Lisa A. ;
Fitzgibbons, Patrick L. ;
Hayes, Daniel F. ;
Lakhani, Sunil R. ;
Chavez-MacGregor, Mariana ;
Perlmutter, Jane ;
Perou, Charles M. ;
Regan, Meredith M. ;
Rimm, David L. ;
Symmans, W. Fraser ;
Torlakovic, Emina E. ;
Varella, Leticia ;
Viale, Giuseppe ;
Weisberg, Tracey F. ;
McShane, Lisa M. ;
Wolff, Antonio C. .
JOURNAL OF CLINICAL ONCOLOGY, 2020, 38 (12) :1346-+
[4]   Cellular Heterogeneity and Molecular Evolution in Cancer [J].
Almendro, Vanessa ;
Marusyk, Andriy ;
Polyak, Kornelia .
ANNUAL REVIEW OF PATHOLOGY: MECHANISMS OF DISEASE, VOL 8, 2013, 8 :277-302
[5]   Expansion sequencing: Spatially precise in situ transcriptomics in intact biological systems [J].
Alon, Shahar ;
Goodwin, Daniel R. ;
Sinha, Anubhav ;
Wassie, Asmamaw T. ;
Chen, Fei ;
Daugharthy, Evan R. ;
Bando, Yosuke ;
Kajita, Atsushi ;
Xue, Andrew G. ;
Marrett, Karl ;
Prior, Robert ;
Cui, Yi ;
Payne, Andrew C. ;
Yao, Chun-Chen ;
Suk, Ho-Jun ;
Wang, Ru ;
Yu, Chih-Chieh ;
Tillberg, Paul ;
Reginato, Paul ;
Pak, Nikita ;
Liu, Songlei ;
Punthambaker, Sukanya ;
Iyer, Eswar P. R. ;
Kohman, Richie E. ;
Miller, Jeremy A. ;
Lein, Ed S. ;
Lako, Ana ;
Cullen, Nicole ;
Rodig, Scott ;
Helvie, Karla ;
Abravanel, Daniel L. ;
Wagle, Nikhil ;
Johnson, Bruce E. ;
Klughammer, Johanna ;
Slyper, Michal ;
Waldman, Julia ;
Jane-Valbuena, Judit ;
Rozenblatt-Rosen, Orit ;
Regev, Aviv ;
Church, George M. ;
Marblestone, Adam H. ;
Boyden, Edward S. .
SCIENCE, 2021, 371 (6528) :481-+
[6]   Multiplexed ion beam imaging of human breast tumors [J].
Angelo, Michael ;
Bendall, Sean C. ;
Finck, Rachel ;
Hale, Matthew B. ;
Hitzman, Chuck ;
Borowsky, Alexander D. ;
Levenson, Richard M. ;
Lowe, John B. ;
Liu, Scot D. ;
Zhao, Shuchun ;
Natkunam, Yasodha ;
Nolan, Garry P. .
NATURE MEDICINE, 2014, 20 (04) :436-+
[7]   Single-Cell Map of Diverse Immune Phenotypes in the Breast Tumor Microenvironment [J].
Azizi, Elham ;
Carr, Ambrose J. ;
Plitas, George ;
Cornish, Andrew E. ;
Konopacki, Catherine ;
Prabhakaran, Sandhya ;
Nainys, Juozas ;
Wu, Kenmin ;
Kiseliovas, Vaidotas ;
Setty, Manu ;
Choi, Kristy ;
Fromme, Rachel M. ;
Phuong Dao ;
McKenney, Peter T. ;
Wasti, Ruby C. ;
Kadaveru, Krishna ;
Mazutis, Linas ;
Rudensky, Alexander Y. ;
Pe'er, Dana .
CELL, 2018, 174 (05) :1293-+
[8]   Punctuated Evolution of Prostate Cancer Genomes [J].
Baca, Sylvan C. ;
Prandi, Davide ;
Lawrence, Michael S. ;
Mosquera, Juan Miguel ;
Romanel, Alessandro ;
Drier, Yotam ;
Park, Kyung ;
Kitabayashi, Naoki ;
MacDonald, Theresa Y. ;
Ghandi, Mahmoud ;
Van Allen, Eliezer ;
Kryukov, Gregory V. ;
Sboner, Andrea ;
Theurillat, Jean-Philippe ;
Soong, T. David ;
Nickerson, Elizabeth ;
Auclair, Daniel ;
Tewari, Ashutosh ;
Beltran, Himisha ;
Onofrio, Robert C. ;
Boysen, Gunther ;
Guiducci, Candace ;
Barbieri, Christopher E. ;
Cibulskis, Kristian ;
Sivachenko, Andrey ;
Carter, Scott L. ;
Saksena, Gordon ;
Voet, Douglas ;
Ramos, Alex H. ;
Winckler, Wendy ;
Cipicchio, Michelle ;
Ardlie, Kristin ;
Kantoff, Philip W. ;
Berger, Michael F. ;
Gabriel, Stacey B. ;
Golub, Todd R. ;
Meyerson, Matthew ;
Lander, Eric S. ;
Elemento, Olivier ;
Getz, Gad ;
Demichelis, Francesca ;
Rubin, Mark A. ;
Garraway, Levi A. .
CELL, 2013, 153 (03) :666-677
[9]   EMT, MET, Plasticity, and Tumor Metastasis [J].
Bakir, Basil ;
Chiarella, Anna M. ;
Pitarresi, Jason R. ;
Rustgi, Anil K. .
TRENDS IN CELL BIOLOGY, 2020, 30 (10) :764-776
[10]   Mass Cytometry: Technique for Real Time Single Cell Multitarget Immunoassay Based on Inductively Coupled Plasma Time-of-Flight Mass Spectrometry [J].
Bandura, Dmitry R. ;
Baranov, Vladimir I. ;
Ornatsky, Olga I. ;
Antonov, Alexei ;
Kinach, Robert ;
Lou, Xudong ;
Pavlov, Serguei ;
Vorobiev, Sergey ;
Dick, John E. ;
Tanner, Scott D. .
ANALYTICAL CHEMISTRY, 2009, 81 (16) :6813-6822