Birth of a Photosynthetic Chassis: A MoClo Toolkit Enabling Synthetic Biology in the Microalga Chlamydomonas reinhardtii

被引:168
作者
Crozet, Pierre [1 ]
Navarro, Francisco J. [2 ]
Willmund, Felix [3 ]
Mehrshahi, Payam [2 ]
Bakowski, Kamil [4 ]
Lauersen, Kyle J. [5 ]
Perez-Perez, Maria-Esther [6 ]
Auroy, Pascaline [7 ]
Rovira, Aleix Gorchs [2 ]
Sauret-Gueto, Susana [2 ]
Niemeyer, Justus [3 ]
Spaniol, Benjamin [3 ]
Theis, Jasmine [3 ]
Troesch, Raphael [3 ]
Westrich, Lisa-Desiree [3 ]
Vavitsas, Konstantinos [4 ,9 ]
Baier, Thomas [5 ]
Huebner, Wolfgang [8 ]
de Carpentier, Felix [1 ]
Cassarini, Mathieu [1 ]
Danon, Antoine [1 ]
Henri, Julien [1 ]
Marchand, Christophe H. [1 ]
de Mia, Marcello [1 ]
Sarkissian, Kevin [1 ]
Baulcombe, David C. [2 ]
Peltier, Gilles [7 ]
Crespo, Jose-Luis [6 ]
Kruse, Olaf [5 ]
Jensen, Poul-Erik [4 ]
Schroda, Michael [3 ]
Smith, Alison G. [2 ]
Lemaire, Stephane D. [1 ]
机构
[1] Sorbonne Univ, CNRS, UMR 8226, Inst Biol Physicochim, Paris, France
[2] Univ Cambridge, Dept Plant Sci, Cambridge CB2 3EA, England
[3] Tech Univ Kaiserslautern, Dept Biol, D-67663 Kaiserslautern, Germany
[4] Univ Copenhagen, Copenhagen Plant Sci Ctr, Dept Plant & Environm Sci, Copenhagen, Denmark
[5] Bielefeld Univ, Fac Biol, Ctr Biotechnol CeBiTec, D-33615 Bielefeld, Germany
[6] Univ Seville, CSIC, Inst Bioquim Vegetal & Fotosintesis, Seville 41092, Spain
[7] Aix Marseille Univ, Lab Bioenerget & Biotechnol Bacteries & Microalgu, CNRS, CEA,BIAM, St Paul Les Durance, France
[8] Bielefeld Univ, Dept Phys, Biomol Photon, D-33615 Bielefeld, Germany
[9] Univ Queensland, AIBN, Brisbane, Qld 4072, Australia
来源
ACS SYNTHETIC BIOLOGY | 2018年 / 7卷 / 09期
基金
英国生物技术与生命科学研究理事会;
关键词
algal biotechnology; Chlamydomonas reinhardtii; modular cloning; synthetic biology; ZINC-FINGER NUCLEASES; HEAT-SHOCK FACTOR-1; GENE-EXPRESSION; INDUSTRIAL BIOTECHNOLOGY; EUKARYOTIC MICROALGAE; TRANSGENE EXPRESSION; COMBINATORIAL DESIGN; REVEALS; DNA; IDENTIFICATION;
D O I
10.1021/acssynbio.8b00251
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
Microalgae are regarded as promising organisms to develop innovative concepts based on their photosynthetic capacity that offers more sustainable production than heterotrophic hosts. However, to realize their potential as green cell factories, a major challenge is to make microalgae easier to engineer. A promising approach for rapid and predictable genetic manipulation is to use standardized synthetic biology tools and workflows. To this end we have developed a Modular Cloning toolkit for the green microalga Chlamydomonas reinhardtii. It is based on Golden Gate cloning with standard syntax, and comprises 119 openly distributed genetic parts, most of which have been functionally validated in several strains. It contains promoters, UTRs, terminators, tags, reporters, antibiotic resistance genes, and introns cloned in various positions to allow maximum modularity. The toolkit enables rapid building of engineered cells for both fundamental research and algal biotechnology. This work will make Chlamydomonas the next chassis for sustainable synthetic biology.
引用
收藏
页码:2074 / 2086
页数:25
相关论文
共 69 条
  • [1] Agapakis CM, 2012, NAT CHEM BIOL, V8, P527, DOI [10.1038/NCHEMBIO.975, 10.1038/nchembio.975]
  • [2] DNA-free two-gene knockout in Chlamydomonas reinhardtii via CRISPR-Cas9 ribonucleoproteins
    Baek, Kwangryul
    Kim, Duk Hyoung
    Jeong, Jooyeon
    Sim, Sang Jun
    Melis, Anastasios
    Kim, Jin-Soo
    Jin, EonSeon
    Bae, Sangsu
    [J]. SCIENTIFIC REPORTS, 2016, 6
  • [3] Efficient expression of nuclear transgenes in the green alga Chlamydomonas: synthesis of an HIV antigen and development of a new selectable marker
    Barahimipour, Rouhollah
    Neupert, Juliane
    Bock, Ralph
    [J]. PLANT MOLECULAR BIOLOGY, 2016, 90 (4-5) : 403 - 418
  • [4] Dissecting the contributions of GC content and codon usage to gene expression in the model alga Chlamydomonas reinhardtii
    Barahimipour, Rouhollah
    Strenkert, Daniela
    Neupert, Juliane
    Schroda, Michael
    Merchant, Sabeeha S.
    Bock, Ralph
    [J]. PLANT JOURNAL, 2015, 84 (04) : 704 - 717
  • [5] Label-Free Analysis and Sorting of Microalgae and Cyanobacteria in Microdroplets by Intrinsic Chlorophyll Fluorescence for the Identification of Fast Growing Strains
    Best, Roshni J.
    Lyczakowski, Jan J.
    Abalde-Cela, Sara
    Yu, Ziyi
    Abell, Chris
    Smith, Alison G.
    [J]. ANALYTICAL CHEMISTRY, 2016, 88 (21) : 10445 - 10451
  • [6] The Nac2 gene of Chlamydomonas encodes a chloroplast TPR-like protein involved in psbD mRNA stability
    Boudreau, E
    Nickelsen, J
    Lemaire, SD
    Ossenbühl, F
    Rochaix, JD
    [J]. EMBO JOURNAL, 2000, 19 (13) : 3366 - 3376
  • [7] Bricks and blueprints: methods and standards for DNA assembly
    Casini, Arturo
    Storch, Marko
    Baldwin, Geoffrey S.
    Ellis, Tom
    [J]. NATURE REVIEWS MOLECULAR CELL BIOLOGY, 2015, 16 (09) : 568 - 576
  • [8] Golden Gate Assembly system dedicated to complex pathway manipulation in Yarrowia lipolytica
    Celinska, Ewelina
    Ledesma-Amaro, Rodrigo
    Larroude, Macarena
    Rossignol, Tristan
    Pauthenier, Cyrille
    Nicaud, Jean-Marc
    [J]. MICROBIAL BIOTECHNOLOGY, 2017, 10 (02): : 450 - 455
  • [9] Designing biological compartmentalization
    Chen, Anna H.
    Silver, Pamela A.
    [J]. TRENDS IN CELL BIOLOGY, 2012, 22 (12) : 662 - 670
  • [10] Inhibition of target of rapamycin signaling by rapamycin in the unicellular green alga Chlamydomonas reinhardtii
    Crespo, JL
    Díaz-Troya, S
    Florencio, FJ
    [J]. PLANT PHYSIOLOGY, 2005, 139 (04) : 1736 - 1749