Facilitating best practices in collecting anomalous scattering data for de novo structure solution at the ESRF Structural Biology Beamlines

被引:7
作者
de Sanctis, Daniele [1 ]
Oscarsson, Marcus [1 ]
Popov, Alexander [1 ]
Svensson, Olof [1 ]
Leonard, Gordon [1 ]
机构
[1] ESRF, 71 Ave Martyrs, F-38000 Grenoble, France
来源
ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY | 2016年 / 72卷
关键词
ESRF; MAD; experimental phasing; MXCuBE2; MACROMOLECULAR CRYSTALLOGRAPHY BEAMLINES; RADIATION-DAMAGE; SYNCHROTRON-RADIATION; DIFFRACTION DATA; MOLECULAR REPLACEMENT; CRYSTAL-STRUCTURES; CATALYTIC PATHWAY; ATOMIC-RESOLUTION; CONTROL-SYSTEM; DATA SETS;
D O I
10.1107/S2059798316001042
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
The constant evolution of synchrotron structural biology beamlines, the viability of screening protein crystals for a wide range of heavy-atom derivatives, the advent of efficient protein labelling and the availability of automatic data-processing and structure-solution pipelines have combined to make de novo structure solution in macromolecular crystallography a less arduous task. Nevertheless, the collection of diffraction data of sufficient quality for experimental phasing is still a difficult and crucial step. Here, some examples of good data-collection practice for projects requiring experimental phasing are presented and recent developments at the ESRF Structural Biology beamlines that have facilitated these are illustrated.
引用
收藏
页码:413 / 420
页数:8
相关论文
共 61 条
[1]   Use of massively multiple merged data for low-resolution S-SAD phasing and refinement of flavivirus NS1 [J].
Akey, David L. ;
Brown, W. Clay ;
Konwerski, Jamie R. ;
Ogata, Craig M. ;
Smith, Janet L. .
ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY, 2014, 70 :2719-2729
[2]   Automation of macromolecular crystallography beamlines [J].
Arzt, S ;
Beteva, A ;
Cipriani, F ;
Delageniere, S ;
Felisaz, F ;
Förstner, G ;
Gordon, E ;
Launer, L ;
Lavault, B ;
Leonard, G ;
Mairs, T ;
McCarthy, A ;
McCarthy, J ;
McSweeney, S ;
Meyer, J ;
Mitchell, E ;
Monaco, S ;
Nurizzo, D ;
Ravelli, R ;
Rey, V ;
Shepard, W ;
Spruce, D ;
Svensson, O ;
Theveneau, P .
PROGRESS IN BIOPHYSICS & MOLECULAR BIOLOGY, 2005, 89 (02) :124-152
[3]   The catalytic pathway of horseradish peroxidase at high resolution [J].
Berglund, GI ;
Carlsson, GH ;
Smith, AT ;
Szöke, H ;
Henriksen, A ;
Hajdu, J .
NATURE, 2002, 417 (6887) :463-468
[4]   The worldwide Protein Data Bank (wwPDB): ensuring a single, uniform archive of PDB data [J].
Berman, Helen ;
Henrick, Kim ;
Nakamura, Haruki ;
Markley, John L. .
NUCLEIC ACIDS RESEARCH, 2007, 35 :D301-D303
[5]   Optimization of data collection taking radiation damage into account [J].
Bourenkov, Gleb P. ;
Popov, Alexander N. .
ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY, 2010, 66 :409-419
[6]   Diffraction cartography: applying microbeams to macromolecular crystallography sample evaluation and data collection [J].
Bowler, Matthew W. ;
Guijarro, Matias ;
Petitdemange, Sebastien ;
Baker, Isabel ;
Svensson, Olof ;
Burghammer, Manfred ;
Mueller-Dieckmann, Christoph ;
Gordon, Elspeth J. ;
Flot, David ;
McSweeney, Sean M. ;
Leonard, Gordon A. .
ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY, 2010, 66 :855-864
[7]   The use of a mini-κ goniometer head in macromolecular crystallography diffraction experiments [J].
Brockhauser, Sandor ;
Ravelli, Raimond B. G. ;
McCarthy, Andrew A. .
ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY, 2013, 69 :1241-1251
[8]   The use of workflows in the design and implementation of complex experiments in macromolecular crystallography [J].
Brockhauser, Sandor ;
Svensson, Olof ;
Bowler, Matthew W. ;
Nanao, Max ;
Gordon, Elspeth ;
Leal, Ricardo M. F. ;
Popov, Alexander ;
Gerring, Matthew ;
McCarthy, Andrew A. ;
Gotz, Andy .
ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY, 2012, 68 :975-984
[9]   The interdependence of wavelength, redundancy and dose in sulfur SAD experiments [J].
Cianci, Michele ;
Helliwell, John R. ;
Suzuki, Atsuo .
ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY, 2008, 64 :1196-1209
[10]   Advanced beamline automation for biological crystallography experiments [J].
Cork, Carl ;
O'Neill, James ;
Taylor, John ;
Earnest, Thomas .
ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY, 2006, 62 :852-858