Human zinc fingers as building blocks in the construction of artificial transcription factors

被引:153
作者
Bae, KH
Do Kwon, Y
Shin, HC
Hwang, MS
Ryu, EH
Park, KS
Yang, HY
Lee, D
Lee, Y
Park, J
Kwon, HS
Kim, HW
Yeh, BI
Lee, HW
Sohn, SH
Yoon, J
Seol, W
Kim, JS
机构
[1] ToolGen Inc, Taejon 305390, South Korea
[2] Seoul Natl Univ, Sch Biol Sci, Seoul 151742, South Korea
[3] Yonsei Univ, Wonju Coll Med, Dept Biochem, Wonju 220701, South Korea
[4] Yonsei Univ, Wonju Coll Med, Inst Basic Med Sci, Wonju 220701, South Korea
[5] Yonsei Univ, Wonju Coll Med, IFBB, Wonju 220701, South Korea
关键词
D O I
10.1038/nbt796
中图分类号
Q81 [生物工程学(生物技术)]; Q93 [微生物学];
学科分类号
071005 ; 0836 ; 090102 ; 100705 ;
摘要
We describe methods for generating artificial transcription factors capable of up- or downregulating the expression of genes whose promoter regions contain the target DNA sequences. To accomplish this, we screened zinc fingers derived from sequences in the human genome and isolated 56 zinc fingers with diverse DNA-binding specificities. We used these zinc fingers as modular building blocks in the construction of novel, sequence-specific DNA-binding proteins. Fusion of these zinc-finger proteins with either a transcriptional activation or repression domain yielded potent transcriptional activators or repressors, respectively. These results show that the human genome encodes zinc fingers with diverse DNA-binding specificities and that these domains can be used to design sequence-specific DNA-binding proteins and artificial transcription factors.
引用
收藏
页码:275 / 280
页数:6
相关论文
共 35 条
[11]   Development of zinc finger domains for recognition of the 5′-ANN-3′ family of DNA sequences and their use in the construction of artificial transcription factors [J].
Dreier, B ;
Beerli, RR ;
Segal, DJ ;
Flippin, JD ;
Barbas, CF .
JOURNAL OF BIOLOGICAL CHEMISTRY, 2001, 276 (31) :29466-29478
[12]   High-resolution structures of variant Zif268-DNA complexes: implications for understanding zinc finger DNA recognition [J].
Elrod-Erickson, M ;
Benson, TE ;
Pabo, CO .
STRUCTURE, 1998, 6 (04) :451-464
[13]   A general strategy for selecting high-affinity zinc finger proteins for diverse DNA target sites [J].
Greisman, HA ;
Pabo, CO .
SCIENCE, 1997, 275 (5300) :657-661
[14]   The complete set of predicted genes from Saccharomyces cerevisiae in a readily usable form [J].
Hudson, JR ;
Dawson, EP ;
Rushing, KL ;
Jackson, CH ;
Lockshon, D ;
Conover, D ;
Lanciault, C ;
Harris, JR ;
Simmons, SJ ;
Rothstein, R ;
Fields, S .
GENOME RESEARCH, 1997, 7 (12) :1169-1173
[15]   A rapid, generally applicable method to engineer zinc fingers illustrated by targeting the HIV-1 promoter [J].
Isalan, M ;
Klug, A ;
Choo, Y .
NATURE BIOTECHNOLOGY, 2001, 19 (07) :656-660
[16]   IN-VITRO SELECTION OF ZINC FINGERS WITH ALTERED DNA-BINDING SPECIFICITY [J].
JAMIESON, AC ;
KIM, SH ;
WELLS, JA .
BIOCHEMISTRY, 1994, 33 (19) :5689-5695
[17]   A bacterial two-hybrid selection system for studying protein-DNA and protein-protein interactions [J].
Joung, JK ;
Ramm, EI ;
Pabo, CO .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2000, 97 (13) :7382-7387
[18]   Zinc finger proteins as designer transcription factors [J].
Kang, JS ;
Kim, JS .
JOURNAL OF BIOLOGICAL CHEMISTRY, 2000, 275 (12) :8742-8748
[19]   Transcriptional repression by zinc finger peptides - Exploring the potential for applications in gene therapy [J].
Kim, JS ;
Pabo, CO .
JOURNAL OF BIOLOGICAL CHEMISTRY, 1997, 272 (47) :29795-29800
[20]   Getting a handhold on DNA: Design of poly-zinc finger proteins with femtomolar dissociation constants [J].
Kim, JS ;
Pabo, CO .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1998, 95 (06) :2812-2817