Laboratory x-ray micro-computed tomography: a user guideline for biological samples

被引:197
作者
du Plessis, Anton [1 ,2 ]
Broeckhoven, Chris [3 ]
Guelpa, Anina [1 ]
le Roux, Stephan Gerhard [1 ]
机构
[1] Stellenbosch Univ, Cent Analyt Facil, CT Scanner Facil, ZA-7602 Stellenbosch, South Africa
[2] Stellenbosch Univ, Dept Phys, ZA-7602 Stellenbosch, South Africa
[3] Stellenbosch Univ, Dept Bot & Zool, ZA-7602 Stellenbosch, South Africa
基金
新加坡国家研究基金会;
关键词
3D imaging; micro-computed tomography; nano-computed tomography; non-destructive analysis; x-ray tomography; CT; MICROTOMOGRAPHY; VISUALIZATION; FACILITY;
D O I
10.1093/gigascience/gix027
中图分类号
Q [生物科学];
学科分类号
07 ; 0710 ; 09 ;
摘要
Laboratory x-ray micro-computed tomography (micro-CT) is a fast-growing method in scientific research applications that allows for non-destructive imaging of morphological structures. This paper provides an easily operated "how to" guide for new potential users and describes the various steps required for successful planning of research projects that involve micro-CT. Background information on micro-CT is provided, followed by relevant setup, scanning, reconstructing, and visualization methods and considerations. Throughout the guide, a Jackson's chameleon specimen, which was scanned at different settings, is used as an interactive example. The ultimate aim of this paper is make new users familiar with the concepts and applications of micro-CT in an attempt to promote its use in future scientific studies.
引用
收藏
页数:11
相关论文
共 30 条
[1]  
Abrmoff MD., 2004, Image Processing with ImageJ, V11, P36, DOI DOI 10.1201/9781420005615.AX4
[2]   Artifacts in CT: Recognition and avoidance [J].
Barrett, JF ;
Keat, N .
RADIOGRAPHICS, 2004, 24 (06) :1679-1691
[3]  
Boas FE., 2012, IMAGING MED, V4, P229, DOI DOI 10.2217/IIM.12.13
[4]  
Broeckhoven C, 2017, METHODS ECO IN PRESS
[5]   Enemy at the gates: Rapid defensive trait diversification in an adaptive radiation of lizards [J].
Broeckhoven, Chris ;
Diedericks, Genevieve ;
Hui, Cang ;
Makhubo, Buyisile G. ;
Mouton, P. le Fras N. .
EVOLUTION, 2016, 70 (11) :2647-2656
[6]   High-resolution CT-based defect analysis and dimensional measurement [J].
Brunke, O. .
INSIGHT, 2010, 52 (02) :91-93
[7]   High-resolution X-ray computed tomography in geosciences: A review of the current technology and applications [J].
Cnudde, V. ;
Boone, M. N. .
EARTH-SCIENCE REVIEWS, 2013, 123 :1-17
[8]   A collection of non-human primate computed tomography scans housed in MorphoSource, a repository for 3D data [J].
Copes, Lynn E. ;
Lucas, Lynn M. ;
Thostenson, James O. ;
Hoekstra, Hopi E. ;
Boyer, Doug M. .
SCIENTIFIC DATA, 2016, 3
[9]  
du Plessis A, 2017, GIGASCIENCE DATABASE
[10]   The CT Scanner Facility at Stellenbosch University: An open access X-ray computed tomography laboratory [J].
du Plessis, Anton ;
le Roux, Stephan Gerhard ;
Guelpa, Anina .
NUCLEAR INSTRUMENTS & METHODS IN PHYSICS RESEARCH SECTION B-BEAM INTERACTIONS WITH MATERIALS AND ATOMS, 2016, 384 :42-49