Live Cell NMR

被引:117
作者
Freedberg, Daron I. [1 ]
Selenko, Philipp [2 ]
机构
[1] USDA, Lab Bacterial Polysaccharides, Ctr Biol Evaluat & Res, Rockville, MD 20852 USA
[2] Leibniz Inst Mol Pharmacol FMP Berlin, Dept NMR Supported Struct Biol, In Cell NMR Lab, D-13125 Berlin, Germany
来源
ANNUAL REVIEW OF BIOPHYSICS, VOL 43 | 2014年 / 43卷
关键词
in-cell NMR; on-cell NMR; in-cell EPR; macromolecular crowding; excluded volume; soft interactions; SOLID-STATE NMR; DYNAMIC NUCLEAR-POLARIZATION; XENOPUS-LAEVIS OOCYTES; ANGLE-SPINNING NMR; MAGNETIC-RESONANCE-SPECTROSCOPY; PROTEIN-PROTEIN INTERACTIONS; LIVING MAMMALIAN-CELLS; IN-CELL; ESCHERICHIA-COLI; F-19; NMR;
D O I
10.1146/annurev-biophys-051013-023136
中图分类号
Q6 [生物物理学];
学科分类号
071011 ;
摘要
Ever since scientists realized that cells are the basic building blocks of all life, they have been developing tools to look inside them to reveal the architectures and mechanisms that define their biological functions. Whereas "looking into cells" is typically said in reference to optical microscopy, high-resolution in-cell and on-cell nuclear magnetic resonance (NMR) spectroscopy is a powerful method that offers exciting new possibilities for structural and functional studies in and on live cells. In contrast to conventional imaging techniques, in-and on-cell NMR methods do not provide spatial information on cellular biomolecules. Instead, they enable atomic-resolution insights into the native cell states of proteins, nucleic acids, glycans, and lipids. Here we review recent advances and developments in both fields and discuss emerging concepts that have been delineated with these methods.
引用
收藏
页码:171 / 192
页数:22
相关论文
共 109 条
[1]   Multi-phosphorylation of the Intrinsically Disordered Unique Domain of c-Src Studied by In-Cell and Real-Time NMR Spectroscopy [J].
Amata, Irene ;
Maffei, Mariano ;
Igea, Ana ;
Gay, Marina ;
Vilaseca, Marta ;
Nebreda, Angel R. ;
Pons, Miquel .
CHEMBIOCHEM, 2013, 14 (14) :1820-1827
[2]  
[Anonymous], BIOPHYS REV
[3]   Probing the Interaction of Cisplatin with the Human Copper Chaperone Atox1 by Solution and In-Cell NMR Spectroscopy [J].
Arnesano, Fabio ;
Banci, Lucia ;
Bertini, Ivano ;
Felli, Isabella C. ;
Losacco, Maurizio ;
Natile, Giovanni .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2011, 133 (45) :18361-18369
[4]   Direct NMR detection of the binding of functional ligands to the human sweet receptor, a heterodimeric family 3 GPCR [J].
Assadi-Porter, Fariba M. ;
Tonelli, Marco ;
Maillet, Emeline ;
Hallenga, Klaas ;
Benard, Outhiriaradjou ;
Max, Marianna ;
Markley, John L. .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2008, 130 (23) :7212-+
[5]   MetJ repressor interactions with DNA probed by in-cell NMR [J].
Augustus, Anne M. ;
Reardon, Patrick N. ;
Spicer, Leonard D. .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2009, 106 (13) :5065-5069
[6]   Site-directed spin-labeling of nucleotides and the use of in-cell EPR to determine long-range distances in a biologically relevant environment [J].
Azarkh, Mykhailo ;
Singh, Vijay ;
Oklre, Oliver ;
Seemann, Isabelle T. ;
Dietrich, Daniel R. ;
Hartig, Joerg S. ;
Drescher, Malte .
NATURE PROTOCOLS, 2013, 8 (01) :131-147
[7]   Intracellular Conformations of Human Telomeric Quadruplexes Studied by Electron Paramagnetic Resonance Spectroscopy [J].
Azarkh, Mykhailo ;
Singh, Vijay ;
Okle, Oliver ;
Dietrich, Daniel R. ;
Hartig, Joerg S. ;
Drescher, Malte .
CHEMPHYSCHEM, 2012, 13 (06) :1444-1447
[8]   Evaluation of spin labels for in-cell EPR by analysis of nitroxide reduction in cell extract of Xenopus laevis oocytes [J].
Azarkh, Mykhailo ;
Okle, Oliver ;
Eyring, Philipp ;
Dietrich, Daniel R. ;
Drescher, Malte .
JOURNAL OF MAGNETIC RESONANCE, 2011, 212 (02) :450-454
[9]   Long-Range Distance Determination in a DNA Model System inside Xenopus laevis Oocytes by In-Cell Spin-Label EPR [J].
Azarkh, Mykhailo ;
Okle, Oliver ;
Singh, Vijay ;
Seemann, Isabelle T. ;
Hartig, Joerg S. ;
Dietrich, Daniel R. ;
Drescher, Malte .
CHEMBIOCHEM, 2011, 12 (13) :1992-1995
[10]   Extracellular structure of polysialic acid explored by on cell solution NMR [J].
Azurmendi, Hugo F. ;
Vionnet, Justine ;
Wrightson, Lauren ;
Trinh, Loc B. ;
Shiloach, Joseph ;
Freedberg, Daron I. .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2007, 104 (28) :11557-11561