Updated Comprehensive Phylogenetic Tree of Global Human Mitochondrial DNA Variation

被引:1396
作者
van Oven, Mannis [1 ]
Kayser, Manfred [1 ]
机构
[1] Erasmus Univ, Med Ctr Rotterdam, Dept Forens Mol Biol, NL-3000 CA Rotterdam, Netherlands
关键词
mitochondrial DNA; phylogenetic tree; haplogroup; mtDNA variation; human evolution; MTDNA HAPLOGROUP-H; Y-CHROMOSOME; PHYLOGEOGRAPHIC ANALYSIS; EVOLUTIONARY HISTORY; POPULATION-STRUCTURE; SETTLEMENT; SEQUENCE; EASTERN; ASIA; POLYMORPHISMS;
D O I
10.1002/humu.20921
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
Human mitochondrial DNA is widely used as tool in many fields including evolutionary anthropology and population history, medical genetics, genetic genealogy, and forensic science. Many applications require detailed knowledge about the phylogenetic relationship of mtDNA variants. Although the phylogenetic resolution of global human mtDNA diversity has greatly improved as a result of increasing sequencing efforts of complete mtDNA genomes, an updated overall mtDNA tree is currently not available. In order to facilitate a better use of known mtDNA variation, we have constructed an updated comprehensive phylogeny of global human mtDNA variation, based on both coding- and control region mutations. This complete mtDNA tree includes previously published as well as newly identified haplogroups, is easily navigable, will be continuously and regularly updated in the future, and is online available at http://www.phylotree.org. (C) 2008 Wiley-Liss, Inc.
引用
收藏
页码:E386 / E394
页数:9
相关论文
共 86 条
  • [61] Phylogeny of mitochondrial DNA macrohaplogroup N in India, based on complete sequencing: Implications for the peopling of South Asia
    Palanichamy, MG
    Sun, C
    Agrawal, S
    Bandelt, HJ
    Kong, QP
    Khan, F
    Wang, CY
    Chaudhuri, TK
    Palla, V
    Zhang, YP
    [J]. AMERICAN JOURNAL OF HUMAN GENETICS, 2004, 75 (06) : 966 - 978
  • [62] Deciphering past human population movements in Oceania: Provably optimal trees of 127 mtDNA genomes
    Pierson, Melanie J.
    Martinez-Arias, Rosa
    Holland, Barbara R.
    Gemmell, Neil J.
    Hurles, Matthew E.
    Penny, David
    [J]. MOLECULAR BIOLOGY AND EVOLUTION, 2006, 23 (10) : 1966 - 1975
  • [63] Phylogeny and antiquity of M macrohaplogroup inferred from complete mt DNA sequence of Indian specific lineages
    Rajkumar, R
    Banerjee, J
    Gunturi, HB
    Trivedi, R
    Kashyap, VK
    [J]. BMC EVOLUTIONARY BIOLOGY, 2005, 5 (1)
  • [64] Austro-Asiatic Tribes of Northeast India Provide Hitherto Missing Genetic Link between South and Southeast Asia
    Reddy, B. Mohan
    Langstieh, B. T.
    Kumar, Vikrant
    Nagaraja, T.
    Reddy, A. N. S.
    Meka, Aruna
    Reddy, A. G.
    Thangaraj, K.
    Singh, Lalji
    [J]. PLOS ONE, 2007, 2 (11):
  • [65] Origin and diffusion of mtDNA haplogroup X
    Reidla, M
    Kivisild, T
    Metspalu, E
    Kaldma, K
    Tambets, K
    Tolk, HV
    Parik, J
    Loogväli, EL
    Derenko, M
    Malyarchuk, B
    Bermisheva, M
    Zhadanov, S
    Pennarun, E
    Gubina, M
    Golubenko, M
    Damba, L
    Fedorova, S
    Gusar, V
    Grechanina, E
    Mikerezi, I
    Moisan, JP
    Chaventré, A
    Khusnutdinova, E
    Osipova, L
    Stepanov, V
    Voevoda, M
    Achilli, A
    Rengo, C
    Rickards, O
    De Stefano, GF
    Papiha, S
    Beckman, L
    Janicijevic, B
    Rudan, P
    Anagnou, N
    Michalodimitrakis, E
    Koziel, S
    Usanga, E
    Geberhiwot, T
    Herrnstadt, C
    Howell, N
    Torroni, A
    Villems, R
    [J]. AMERICAN JOURNAL OF HUMAN GENETICS, 2003, 73 (05) : 1178 - 1190
  • [66] The mitochondrial DNA tree and forensic science
    Richards, M
    [J]. PROGRESS IN FORENSIC GENETICS 10, 2004, 1261 : 91 - 93
  • [67] Phylogeography of mitochondrial DNA in western Europe
    Richards, MB
    Macaulay, VA
    Bandelt, HJ
    Sykes, BC
    [J]. ANNALS OF HUMAN GENETICS, 1998, 62 : 241 - 260
  • [68] Origin and expansion of haplogroup H, the dominant human mitochondrial DNA lineage in West Eurasia:: The near eastern and Caucasian perspective
    Roostalu, U.
    Kutuev, I.
    Loogvali, E. -L.
    Metspalu, E.
    Tambets, K.
    Reidla, M.
    Khusnutdinova, E. K.
    Usanga, E.
    Kivisild, T.
    Villems, R.
    [J]. MOLECULAR BIOLOGY AND EVOLUTION, 2007, 24 (02) : 436 - 448
  • [69] An enhanced MITOMAP with a global mtDNA mutational phylogeny
    Ruiz-Pesini, Eduardo
    Lott, Marie T.
    Procaccio, Vincent
    Poole, Jason C.
    Brandon, Marty C.
    Mishmar, Dan
    Yi, Christina
    Kreuziger, James
    Baldi, Pierre
    Wallace, Douglas C.
    [J]. NUCLEIC ACIDS RESEARCH, 2007, 35 : D823 - D828
  • [70] Phylogeographic investigations: The role of trees in forensic genetics
    Salas, A.
    Bandelt, H.-J.
    Macaulay, V.
    Richards, M. B.
    [J]. FORENSIC SCIENCE INTERNATIONAL, 2007, 168 (01) : 1 - 13