Cell size distribution of lineage data: Analytic results and parameter inference

被引:29
|
作者
Jia, Chen [1 ]
Singh, Abhyudai [2 ]
Grima, Ramon [3 ]
机构
[1] Beijing Computat Sci Res Ctr, Appl & Computat Math Div, Beijing 100193, Peoples R China
[2] Univ Delaware, Dept Elect & Comp Engn, Newark, DE 19716 USA
[3] Univ Edinburgh, Sch Biol Sci, Edinburgh EH9 3JH, Midlothian, Scotland
基金
中国国家自然科学基金;
关键词
GENE-EXPRESSION; SINGLE-CELL; BUDDING YEAST; GROWTH; PROLIFERATION; HOMEOSTASIS; MECHANISMS; DYNAMICS; MODELS; NOISE;
D O I
10.1016/j.isci.2021.102220
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
Recent advances in single-cell technologies have enabled time-resolved measurements of the cell size over several cell cycles. These data encode information on how cells correct size aberrations so that they do not grow abnormally large or small. Here, we formulate a piecewise deterministic Markov model describing the evolution of the cell size over many generations, for all three cell size homeostasis strategies (timer, sizer, and adder). The model is solved to obtain an analytical expression for the non-Gaussian cell size distribution in a cell lineage; the theory is used to understand how the shape of the distribution is influenced by the parameters controlling the dynamics of the cell cycle and by the choice of cell tracking protocol. The theoretical cell size distribution is found to provide an excellent match to the experimental cell size distribution of E. coli lineage data collected under various growth conditions.
引用
收藏
页数:33
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