共 52 条
Vibrational Spectroscopy in Solution through Perturbative ab Initio Molecular Dynamics Simulations
被引:9
作者:
Bistafa, Carlos
[1
]
Kitamura, Yukichi
[1
]
Martins-Costa, Marilia T. C.
[2
]
Nagaoka, Masataka
[1
,3
,4
,5
]
Ruiz-Lopez, Manuel F.
[2
,5
]
机构:
[1] Nagoya Univ, Grad Sch Informat, Dept Complex Syst Sci, Chikusa Ku, Furo Cho, Nagoya, Aichi 4648601, Japan
[2] Univ Lorraine, Fac Sci & Technol, CNRS, Lab Phys & Chim Theor,UMR 7019, BP 70239, F-54506 Vandoeuvre Les Nancy, France
[3] Kyoto Univ, ESICB, Nishikyo Ku, Kyoto 6158520, Japan
[4] Japan Sci & Technol Agcy, Core Res Evolut Sci & Technol, Kawaguchi, Saitama 3320012, Japan
[5] Nagoya Univ, Grad Sch Informat, Future Value Creat Res Ctr, Chikusa Ku, Furo Cho, Nagoya, Aichi 4648601, Japan
关键词:
INSTANTANEOUS-NORMAL-MODE;
ENERGY GRADIENT-METHOD;
TRANSITION-STATE OPTIMIZATION;
TIME-CORRELATION FUNCTION;
INFRARED-SPECTRUM;
LIQUID WATER;
QM/MM;
AMMONIA;
QUANTUM;
INTENSITIES;
D O I:
10.1021/acs.jctc.9b00362
中图分类号:
O64 [物理化学(理论化学)、化学物理学];
学科分类号:
070304 ;
081704 ;
摘要:
We have developed a method that allows computing the vibrational spectra at a high quantum mechanical level for molecules in solution or other complex systems. The method is based on the use of configurational samplings from combined QM/MM molecular dynamics simulations and the use of perturbation theory to calculate accurate molecular properties. Such calculations provide in addition accurate free energy gradient vectors and Hessian matrices and thus open the door for the characterization of stationary points in free energy landscapes and the study of chemical reaction mechanisms in large disordered systems. The vibrational spectrum of the water molecule in liquid water has been computed as a test case. It has been obtained using a weighted average of instantaneous signals assuming the instantaneous normal modes approach. Vibrational frequencies are also computed by diagonalizing the Hessian of the free energy surface. Comparison is made with experimental data and with calculations using the Fourier transform of the time autocorrelation function of the dipole moment. The discussion emphasizes the advantages of the developed methodology compared to other techniques in terms of the accuracy/computational cost ratio.
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页码:4615 / 4622
页数:8
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