MiRNA fine tuning for crop improvement: using advance computational models and biotechnological tools

被引:16
作者
Abbas, Asad [1 ]
Shah, Adnan Noor [2 ]
Tanveer, Mohsin [3 ]
Ahmed, Waseem [4 ]
Shah, Anis Ali [5 ]
Fiaz, Sajid [6 ]
Waqas, Muhammad Mohsin [2 ]
Ullah, Sami [7 ]
机构
[1] Anhui Agr Univ, Sch Hort, Hefei 230036, Peoples R China
[2] Khwaja Fareed Univ Engn & Informat Technol, Dept Agr Engn, Rahim Yar Khan 64200, Punjab, Pakistan
[3] Univ Tasmania, Tasmanian Inst Agr, Hobart, Tas, Australia
[4] Univ Haripur, Dept Hort, Hatatr Rd, Haripur 22620, Pakistan
[5] Univ Educ, Dept Bot, Div Sci & Technol, Lahore, Pakistan
[6] Univ Haripur, Dept Plant Breeding & Genet, Haripur, Pakistan
[7] King Khalid Univ, Coll Sci, Dept Chem, Abha 61413, Saudi Arabia
关键词
MiRNA; Fine tuning; Crop stress tolerance; Computational models; Biotechnological tools; SMALL RNAS; TARGET INTERACTIONS; GENE-REGULATION; MICRORNA GENES; PLANT; IDENTIFICATION; TRANSCRIPTOME; INSIGHTS; RECOGNITION; MECHANISMS;
D O I
10.1007/s11033-022-07231-5
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
MiRNAs modulate target genes expression at post-transcriptional levels, by reducing spatial abundance of mRNAs. MiRNAs regulats plant metabolism, and emerged as regulators of plant stress responses. Which make miRNAs promising candidates for fine tuning to affectively alter crop stress tolerance and other important traits. With recent advancements in the computational biology and biotechnology miRNAs structure and target prediction is possible resulting in pin point editing; miRNA modulation can be done by up or down regulating miRNAs using recently available biotechnological tools (CRISPR Cas9, TALENS and RNAi). In this review we have focused on miRNA biogenesis, miRNA roles in plant development, plant stress responses and roles in signaling pathways. Additionally we have discussed latest computational prediction models for miRNA to target gene interaction and biotechnological systems used recently for miRNA modulation. We have also highlighted setbacks and limitations in the way of miRNA modulation; providing entirely a new direction for improvement in plant genomics primarily focusing miRNAs.
引用
收藏
页码:5437 / 5450
页数:14
相关论文
共 128 条
[1]   The Development of a Green Innovative Bioactive Film for Industrial Application as a New Emerging Technology to Protect the Quality of Fruits [J].
Ahmed, Waseem ;
Azmat, Rafia ;
Khojah, Ebtihal ;
Ahmed, Rasheed ;
Qayyum, Abdul ;
Shah, Adnan Noor ;
Abbas, Asad ;
Moin, Sumeira ;
Samra, Bassem N. .
MOLECULES, 2022, 27 (02)
[2]   Identification and Characterization of Salt-Responsive MicroRNAs in Vicia faba by High-Throughput Sequencing [J].
Alzahrani, Saud M. ;
Alaraidh, Ibrahim A. ;
Khan, Muhammad A. ;
Migdadi, Hussein M. ;
Alghamdi, Salem S. ;
Alsahli, Abdluaziz A. .
GENES, 2019, 10 (04)
[3]   RNA virus interference via CRISPR/Cas13a system in plants [J].
Aman, Rashid ;
Ali, Zahir ;
Butt, Haroon ;
Mahas, Ahmed ;
Aljedaani, Fatimah ;
Khan, Muhammad Zuhaib ;
Ding, Shouwei ;
Mahfouz, Magdy .
GENOME BIOLOGY, 2018, 19
[4]   Antiquity of microRNAs and their targets in land plants [J].
Axtell, MJ ;
Bartel, DP .
PLANT CELL, 2005, 17 (06) :1658-1673
[5]   Small RNA profiling reveals regulation of Arabidopsis miR168 and heterochromatic siRNA415 in response to fungal elicitors [J].
Baldrich, Patricia ;
Kakar, Klementina ;
Sire, Christelle ;
Beatriz Moreno, Ana ;
Berger, Angelique ;
Garcia-Chapa, Meritxell ;
Jose Lopez-Moya, Juan ;
Luis Riechmann, Jose ;
San Segundo, Blanca .
BMC GENOMICS, 2014, 15
[6]   Arabidopsis microRNA expression regulation in a wide range of abiotic stress responses [J].
Barciszewska-Pacak, Maria ;
Milanowska, Kaja ;
Knop, Katarzyna ;
Bielewicz, Dawid ;
Nuc, Przemyslaw ;
Plewka, Patrycja ;
Pacak, Andrzej M. ;
Vazquez, Franck ;
Karlowski, Wojciech ;
Jarmolowki, Artur ;
Szweykowska-Kulinska, Zofia .
FRONTIERS IN PLANT SCIENCE, 2015, 6
[7]   MicroRNAs and new biotechnological tools for its modulation and improving stress tolerance in plants [J].
Basso, Marcos Fernando ;
Gomes Ferreira, Paulo Cavalcanti ;
Kobayashi, Adilson Kenji ;
Harmon, Frank G. ;
Nepomuceno, Alexandre Lima ;
Correa Molinari, Hugo Bruno ;
Grossi-de-Sa, Maria Fatima .
PLANT BIOTECHNOLOGY JOURNAL, 2019, 17 (08) :1482-1500
[8]   Arabidopsis ARGONAUTE1 is an RNA Slicer that selectively recruits rnicroRNAs and short interfering RNAs [J].
Baumberger, N ;
Baulcombe, DC .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2005, 102 (33) :11928-11933
[9]   Disruption of miRNA sequences by TALENs and CRISPR/Cas9 induces varied lengths of miRNA production [J].
Bi, Honghao ;
Fei, Qili ;
Li, Riqing ;
Liu, Bo ;
Xia, Rui ;
Char, Si Nian ;
Meyers, Blake C. ;
Yang, Bing .
PLANT BIOTECHNOLOGY JOURNAL, 2020, 18 (07) :1526-1536
[10]   The CRISPR/Cas9 system for plant genome editing and beyond [J].
Bortesi, Luisa ;
Fischer, Rainer .
BIOTECHNOLOGY ADVANCES, 2015, 33 (01) :41-52