Complete Genome Sequence of Lactococcus lactis subsp lactis KF147, a Plant-Associated Lactic Acid Bacterium

被引：88

作者：

Siezen, Roland J. ^{[1
,2
,3
]}

Bayjanov, Jumamurat ^{[3
]}

Renckens, Bernadet ^{[1
,3
]}

Wels, Michiel ^{[1
,2
,3
]}

van Hijum, Sacha A. F. T. ^{[1
,2
,3
]}

Molenaar, Douwe ^{[1
,2
]}

Vlieg, Johan E. T. van Hylckama ^{[1
,2
]}

机构：

[1] NIZO Food Res, Kluyver Ctr Genom Ind Fermentat, NL-6710 BA Ede, Netherlands

[2] TI Food & Nutr, NL-6700 AN Wageningen, Netherlands

[3] Radboud Univ Nijmegen Med Ctr, Netherlands Bioinformat Ctr, CMBI 260, NL-6500 HB Nijmegen, Netherlands

来源：

JOURNAL OF BACTERIOLOGY | 2010年 / 192卷 / 10期

关键词：

D O I：

10.1128/JB.00276-10

中图分类号：

Q93 [微生物学];

学科分类号：

071005 ; 100705 ;

摘要：

Lactococcus lactis is a lactic acid bacterium used in the production of many fermented dairy products. We report the complete genome sequence of L. lactis subsp. lactis KF147, a nondairy strain isolated from mung bean sprouts. The circular chromosome of 2,598,144 bp, the largest among the sequenced lactococcal strains, encodes many properties related to adaptation to the plant environment.

引用

页码：2649 / 2650

页数：2

共 10 条

[1]

BACHMANN H, 2009, THESIS WAGENINGEN U

[2]

Bateman A, 2004, NUCLEIC ACIDS RES, V32, pD138, DOI [10.1093/nar/gkp985, 10.1093/nar/gkh121, 10.1093/nar/gkr1065]

[3] The complete genome sequence of the lactic acid bacterium Lactococcus lactis ssp lactis IL1403 [J].

Bolotin, A ;

Wincker, P ;

Mauger, S ;

Jaillon, O ;

Malarme, K ;

Weissenbach, J ;

Ehrlich, SD ;

Sorokin, A .

GENOME RESEARCH, 2001, 11 (05) :731-753

[4] Pfam:: clans, web tools and services [J].

Finn, Robert D. ;

Mistry, Jaina ;

Schuster-Bockler, Benjamin ;

Griffiths-Jones, Sam ;

Hollich, Volker ;

Lassmann, Timo ;

Moxon, Simon ;

Marshall, Mhairi ;

Khanna, Ajay ;

Durbin, Richard ;

Eddy, Sean R. ;

Sonnhammer, Erik L. L. ;

Bateman, Alex .

NUCLEIC ACIDS RESEARCH, 2006, 34 :D247-D251

[5] Characterization of lactococci isolated from minimally processed fresh fruit and vegetables [J].

Kelly, WJ ;

Davey, GP ;

Ward, LJH .

INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY, 1998, 45 (02) :85-92

[6] Comparative genomics of the lactic acid bacteria [J].

Makarova, K. ;

Slesarev, A. ;

Wolf, Y. ;

Sorokin, A. ;

Mirkin, B. ;

Koonin, E. ;

Pavlov, A. ;

Pavlova, N. ;

Karamychev, V. ;

Polouchine, N. ;

Shakhova, V. ;

Grigoriev, I. ;

Lou, Y. ;

Rohksar, D. ;

Lucas, S. ;

Huang, K. ;

Goodstein, D. M. ;

Hawkins, T. ;

Plengvidhya, V. ;

Welker, D. ;

Hughes, J. ;

Goh, Y. ;

Benson, A. ;

Baldwin, K. ;

Lee, J. -H. ;

Diaz-Muniz, I. ;

Dosti, B. ;

Smeianov, V. ;

Wechter, W. ;

Barabote, R. ;

Lorca, G. ;

Altermann, E. ;

Barrangou, R. ;

Ganesan, B. ;

Xie, Y. ;

Rawsthorne, H. ;

Tamir, D. ;

Parker, C. ;

Breidt, F. ;

Broadbent, J. ;

Hutkins, R. ;

O'Sullivan, D. ;

Steele, J. ;

Unlu, G. ;

Saier, M. ;

Klaenhammer, T. ;

Richardson, P. ;

Kozyavkin, S. ;

Weimer, B. ;

Mills, D. .

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2006, 103 (42) :15611-15616

[7] The ERGO™ genome analysis and discovery system [J].

Overbeek, R ;

Larsen, N ;

Walunas, T ;

D'Souza, M ;

Pusch, G ;

Selkov, E ;

Liolios, K ;

Joukov, V ;

Kaznadzey, D ;

Anderson, I ;

Bhattacharyya, A ;

Burd, H ;

Gardner, W ;

Hanke, P ;

Kapatral, V ;

Mikhailova, N ;

Vasieva, O ;

Osterman, A ;

Vonstein, V ;

Fonstein, M ;

Ivanova, N ;

Kyrpides, N .

NUCLEIC ACIDS RESEARCH, 2003, 31 (01) :164-171

[8] InterProScan: protein domains identifier [J].

Quevillon, E ;

Silventoinen, V ;

Pillai, S ;

Harte, N ;

Mulder, N ;

Apweiler, R ;

Lopez, R .

NUCLEIC ACIDS RESEARCH, 2005, 33 :W116-W120

[9] Genome-scale genotype-phenotype matching of two Lactococcus lactis isolates from plants identifies mechanisms of adaptation to the plant niche [J].

Siezen, Roland J. ;

Starrenburg, Marjo J. C. ;

Boekhorst, Jos ;

Renckens, Bernadet ;

Molenaar, Douwe ;

Vlieg, Johan E. T. van Hylckama .

APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 2008, 74 (02) :424-436

[10] Complete genome sequence of the prototype lactic acid bacterium Lactococcus lactis subsp cremoris MG1363 [J].

Wegmann, Udo ;

O'Connell-Motherwy, Mary ;

Zomer, Aldert ;

Buist, Girbe ;

Shearman, Claire ;

Canchaya, Carlos ;

Ventura, Marco ;

Goesmann, Alexander ;

Gasson, Michael J. ;

Kuipers, Oscar P. ;

van Sinderen, Douwe ;

Kok, Jan .

JOURNAL OF BACTERIOLOGY, 2007, 189 (08) :3256-3270

← 1 →