Complete plastome sequence of Mallotus japonicus (Linn. f.) Mull. Arg. (Euphorbiaceae): a medicinal plant species endemic in East Asia

被引:4
作者
Wu, Wan-Ping [1 ]
Zhang, Xiao-Feng [1 ]
Zhu, Zhi-Xin [1 ]
Wang, Hua-Feng [1 ]
机构
[1] Hainan Univ, Coll Trop Crops, Hainan Key Lab Sustainable Utilizat Trop Bioresou, Haikou, Hainan, Peoples R China
来源
MITOCHONDRIAL DNA PART B-RESOURCES | 2021年 / 6卷 / 04期
关键词
Mallotus japonicas; Euphorbiaceae; plastome; genome structure; phylogenetic;
D O I
10.1080/23802359.2021.1911707
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
Mallotus japonicus is a shrub species in the family of Euphorbiaceae. The study of plastome would be helpful for its phylogenetic study and species identification. The total length of complete plastome for Mallotus japonicus is of 164,912 bp, with typical part-four structure and gene content of angiosperm plastome, including two inverted repeat (IR) regions of 27,829 bp, a large single-copy (LSC) region of 90,319 bp, and a small single-copy (SSC) region of 18,935 bp. The plastome contains 125 genes, consisting of 80 unique protein-coding genes, 31 unique tRNA gene, four unique rRNA genes (5S rRNA, 4.5S rRNA, 16S rRNA, and 23S rRNA), and five pseudogenes. The overall G/C content in the plastome of Mallotus japonicus is 40.2%. The phylogenetic analysis indicates that M. japonicus is closer to M. peltatus than other species in this study. The complete plastome sequence is conducive to the exploitation and utilization of Euphorbiaceae resources and the phylogenetic study in future.
引用
收藏
页码:1409 / 1410
页数:2
相关论文
共 5 条
  • [1] Reconstructing mitochondrial genomes directly from genomic next-generation sequencing reads-a baiting and iterative mapping approach
    Hahn, Christoph
    Bachmann, Lutz
    Chevreux, Bastien
    [J]. NUCLEIC ACIDS RESEARCH, 2013, 41 (13) : e129
  • [2] jmodeltest.org: selection of nucleotide substitution models on the cloud
    Manuel Santorum, Jose
    Darriba, Diego
    Taboada, Guillermo L.
    Posada, David
    [J]. BIOINFORMATICS, 2014, 30 (09) : 1310 - 1311
  • [3] Castor Bean Organelle Genome Sequencing and Worldwide Genetic Diversity Analysis
    Rivarola, Maximo
    Foster, Jeffrey T.
    Chan, Agnes P.
    Williams, Amber L.
    Rice, Danny W.
    Liu, Xinyue
    Melake-Berhan, Admasu
    Creasy, Heather Huot
    Puiu, Daniela
    Rosovitz, M. J.
    Khouri, Hoda M.
    Beckstrom-Sternberg, Stephen M.
    Allan, Gerard J.
    Keim, Paul
    Ravel, Jacques
    Rabinowicz, Pablo D.
    [J]. PLOS ONE, 2011, 6 (07):
  • [4] Satomi Y., 2001, DIGEST DIS, V51, P215
  • [5] RAxML-VI-HPC: Maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models
    Stamatakis, Alexandros
    [J]. BIOINFORMATICS, 2006, 22 (21) : 2688 - 2690