Biskit -: A software platform for structural bioinformatics

被引：50

作者：

Gruenberg, Raik

Nilges, Michael

Leckner, Johan

机构：

[1] CRG, Syst Biol Program, E-08003 Barcelona, Spain

[2] Inst Pasteur, Unite Bio Informat Struct, CNRS URA 2185, F-75724 Paris 15, France

[3] Univ Gothenburg, Swedish NMR Ctr, SE-40530 Gothenburg, Sweden

来源：

BIOINFORMATICS | 2007年 / 23卷 / 06期

关键词：

D O I：

10.1093/bioinformatics/btl655

中图分类号：

Q5 [生物化学];

学科分类号：

071010 ; 081704 ;

摘要：

Biskit is a modular, object-oriented python library that provides intuitive classes for many typical tasks of structural bioinformatics research. It facilitates the manipulation and analysis of macromolecular structures, protein complexes and molecular dynamics trajectories. At the same time, Biskit offers a software platform for the rapid integration of external programs and new algorithms into complex structural bioinformatics workflows. Calculations are thus often delegated to established programs like Xplor, Amber, Hex, Prosa, Hmmer and Modeller; interfaces to further software can be easily added. Moreover, Biskit simplifies the parallelization of time consuming calculations via PVM (Parallel Virtual Machine).

引用

页码：769 / 770

页数：2

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