On the Integration of In Silico Drug Design Methods for Drug Repurposing

被引:142
作者
March-Vila, Eric [1 ]
Pinzi, Luca [1 ]
Sturm, Noe [1 ]
Tinivella, Annachiara [1 ]
Engkvist, Ola [2 ]
Chen, Hongming [2 ]
Rastelli, Giulio [1 ]
机构
[1] Univ Modena & Reggio Emilia, Dept Life Sci, Mol Modelling & Drug Design Lab, Modena, Italy
[2] AstraZeneca R&D Gothenburg, Discovery Sci Innovat Med & Early Dev Biotech Uni, Molndal, Sweden
来源
FRONTIERS IN PHARMACOLOGY | 2017年 / 8卷
关键词
drug repurposing; drug discovery; molecular modeling; chemogenomics; structure-based drug design; ligand-based drug design; machine learning; transcriptomics; LIGAND-BASED APPROACH; GENE-EXPRESSION; BINDING-SITES; PREDICTION; DISCOVERY; PHARMACOLOGY; POLYPHARMACOLOGY; IDENTIFICATION; INTERACTOME; INHIBITORS;
D O I
10.3389/fphar.2017.00298
中图分类号
R9 [药学];
学科分类号
1007 ;
摘要
Drug repurposing has become an important branch of drug discovery. Several computational approaches that help to uncover new repurposing opportunities and aid the discovery process have been put forward, or adapted from previous applications. A number of successful examples are now available. Overall, future developments will greatly benefit from integration of different methods, approaches and disciplines. Steps forward in this direction are expected to help to clarify, and therefore to rationally predict, new drug-target, target-disease, and ultimately drug-disease associations.
引用
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页数:7
相关论文
共 46 条
  • [1] Alaimo S, 2016, METHODS MOL BIOL, V1415, P441, DOI 10.1007/978-1-4939-3572-7_23
  • [2] Computational Polypharmacology Analysis of the Heat Shock Protein 90 Interactome
    Anighoro, Andrew
    Stumpfe, Dagmar
    Heikamp, Kathrin
    Beebe, Kristin
    Neckers, Leonard M.
    Bajorath, Jurgen
    Rastelli, Giulio
    [J]. JOURNAL OF CHEMICAL INFORMATION AND MODELING, 2015, 55 (03) : 676 - 686
  • [3] Analysis of pharmacology data and the prediction of adverse drug reactions and off-target effects from chemical structure
    Bender, Andreas
    Scheiber, Josef
    Glick, Meir
    Davies, John W.
    Azzaoui, Kamal
    Hamon, Jacques
    Urban, Laszlo
    Whitebread, Steven
    Jenkins, Jeremy L.
    [J]. CHEMMEDCHEM, 2007, 2 (06) : 861 - 873
  • [4] The Protein Data Bank
    Berman, HM
    Westbrook, J
    Feng, Z
    Gilliland, G
    Bhat, TN
    Weissig, H
    Shindyalov, IN
    Bourne, PE
    [J]. NUCLEIC ACIDS RESEARCH, 2000, 28 (01) : 235 - 242
  • [5] Discovery of multiple hidden allosteric sites by combining Markov state models and experiments
    Bowman, Gregory R.
    Bolin, Eric R.
    Hart, Kathryn M.
    Maguire, Brendan C.
    Marqusee, Susan
    [J]. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2015, 112 (09) : 2734 - 2739
  • [6] A standard database for drug repositioning
    Brown, Adam S.
    Patel, Chirag J.
    [J]. SCIENTIFIC DATA, 2017, 4
  • [7] Evaluation of phenoxybenzamine in the CFA model of pain following gene expression studies and connectivity mapping
    Chang, Meiping
    Smith, Sarah
    Thorpe, Andrew
    Barratt, Michael J.
    Karim, Farzana
    [J]. MOLECULAR PAIN, 2010, 6
  • [8] Prediction of Protein Pairs Sharing Common Active Ligands Using Protein Sequence, Structure, and Ligand Similarity
    Chen, Yu-Chen
    Tolber, Robert
    Aronov, Alex M.
    McGaughey, Georgia
    Walters, W. Patrick
    Meireles, Lidio
    [J]. JOURNAL OF CHEMICAL INFORMATION AND MODELING, 2016, 56 (09) : 1734 - 1745
  • [9] Big data in biomedicine
    Costa, Fabricio F.
    [J]. DRUG DISCOVERY TODAY, 2014, 19 (04) : 433 - 440
  • [10] Predicting New Indications for Approved Drugs Using a Proteochemometric Method
    Dakshanamurthy, Sivanesan
    Issa, Naiem T.
    Assefnia, Shahin
    Seshasayee, Ashwini
    Peters, Oakland J.
    Madhavan, Subha
    Uren, Aykut
    Brown, Milton L.
    Byers, Stephen W.
    [J]. JOURNAL OF MEDICINAL CHEMISTRY, 2012, 55 (15) : 6832 - 6848