The RESID Database of Protein Modifications: 2003 developments

被引:27
作者
Garavelli, JS [1 ]
机构
[1] Eruopean Bioinformat Inst, EMBL Outstn, Cambridge CB10 1SD, England
关键词
D O I
10.1093/nar/gkg038
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
The RESID Database is a comprehensive collection of annotations and structures for protein pre-, co- and post- translational modifications including amino- terminal, carboxyl- terminal and peptide chain cross- link modi cations. The RESID Database includes: systematic and alternate names, atomic formulas and masses, enzyme activities generating the modi cations, keywords, literature citations, Gene Ontology cross- references, Protein Information Resource ( PIR) and SWISS- PROT protein sequence database feature table annotations, structure diagrams and molecular models. This database is freely accessible on the Internet through the European Bioinformatics Institute at http: / / srs. ebi. ac. uk/ srs6bin/ cgi- bin/ wgetz? - page+ LibInfo+ - lib+ RESID, through the National Cancer Institute Frederick Advanced Biomedical Computing Center at http: / / www. ncifcrf. gov/ RESID, or through the Protein Information Resource at http: / / pir. georgetown. edu/ pirwww/ dbinfo/ resid. html.
引用
收藏
页码:499 / 501
页数:3
相关论文
共 15 条
[1]   The essential role of mass spectrometry in characterizing protein structure: Mapping posttranslational modifications [J].
Annan, RS ;
Carr, SA .
JOURNAL OF PROTEIN CHEMISTRY, 1997, 16 (05) :391-402
[2]  
Ashburner M, 2001, GENOME RES, V11, P1425
[3]   The SWISS-PROT protein knowledgebase and its supplement TrEMBL in 2003 [J].
Boeckmann, B ;
Bairoch, A ;
Apweiler, R ;
Blatter, MC ;
Estreicher, A ;
Gasteiger, E ;
Martin, MJ ;
Michoud, K ;
O'Donovan, C ;
Phan, I ;
Pilbout, S ;
Schneider, M .
NUCLEIC ACIDS RESEARCH, 2003, 31 (01) :365-370
[4]  
DAWKINS R, 1996, CLIMBING MOUNT IMPRO, P66
[5]   Bioinorganic motifs: towards functional classification of metalloproteins [J].
Degtyarenko, K .
BIOINFORMATICS, 2000, 16 (10) :851-864
[6]  
GARAVELLI JS, 1993, PROTEIN SCI S1, V2, P133
[7]   Prediction of human protein function from post-translational modifications and localization features [J].
Jensen, LJ ;
Gupta, R ;
Blom, N ;
Devos, D ;
Tamames, J ;
Kesmir, C ;
Nielsen, H ;
Stærfeldt, HH ;
Rapacki, K ;
Workman, C ;
Andersen, CAF ;
Knudsen, S ;
Krogh, A ;
Valencia, A ;
Brunak, S .
JOURNAL OF MOLECULAR BIOLOGY, 2002, 319 (05) :1257-1265
[8]   Processing complex mixtures of intact proteins for direct analysis by mass spectrometry [J].
Meng, FY ;
Cargile, BJ ;
Patrie, SM ;
Johnson, JR ;
McLoughlin, SM ;
Kelleher, NL .
ANALYTICAL CHEMISTRY, 2002, 74 (13) :2923-2929
[9]   Review:: Prediction of in vivo fates of proteins in the era of genomics and proteomics [J].
Nakai, K .
JOURNAL OF STRUCTURAL BIOLOGY, 2001, 134 (2-3) :103-116
[10]   Pyrrolysine encoded by UAG in Archaea: Charging of a UAG-decoding specialized tRNA [J].
Srinivasan, G ;
James, CM ;
Krzycki, JA .
SCIENCE, 2002, 296 (5572) :1459-1462