Ribosomal protein L7/L12 is required for GTPase translation factors EF-G, RF3, and IF2 to bind in their GTP state to 70S ribosomes

被引:36
作者
Carlson, Markus A. [1 ]
Haddad, Bassam G. [1 ]
Weis, Amanda J. [1 ]
Blackwood, Colby S. [1 ]
Shelton, Catherine D. [1 ]
Wuerth, Michelle E. [1 ]
Walter, Justin D. [1 ]
Spiegel, Paul Clint, Jr. [1 ]
机构
[1] Western Washington Univ, Dept Chem, 516 High St,MS 9150, Bellingham, WA 98225 USA
基金
美国国家卫生研究院;
关键词
ribosome; translation; elongation factor G; protein L7/L12; GTPase; ELONGATION-FACTOR-G; TRANSFER-RNA; INITIATION; LEPA; L12; L7; ACTIVATION; MECHANISM; MOVEMENT; SUBUNIT;
D O I
10.1111/febs.14067
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Ribosomal protein L7/L12 is associated with translation initiation, elongation, and termination by the 70S ribosome. The guanosine 5 triphosphate hydrolase (GTPase) activity of elongation factor G (EF-G) requires the presence of L7/L12, which is critical for ribosomal translocation. Here, we have developed new methods for the complete depletion of L7/L12 from Escherichia coli 70S ribosomes to analyze the effect of L7/L12 on the activities of the GTPase factors EF-G, RF3, IF2, and LepA. Upon removal of L7/L12 from ribosomes, the GTPase activities of EF-G, RF3, and IF2 decreased to basal levels, while the activity of LepA decreased marginally. Upon reconstitution of ribosomes with recombinant L12, the GTPase activities of all GTPases returned to full activity. Moreover, ribosome binding assays indicated that EF-G, RF3, and IF2 require L7/L12 for stable binding in the GTP state, and LepA retained > 50% binding. Lastly, an EF-GG truncation mutant possessed ribosome-dependent GTPase activity, which was insensitive to L7/L12. Our results indicate that L7/L12 is required for stable binding of ribosome-dependent GTPases that harbor direct interactions to the L7/L12 C-terminal domains, either through a G domain (EF-G, RF3) or a unique N-terminal domain (IF2). Furthermore, we hypothesize this interaction is concomitant with counterclockwise ribosomal intersubunit rotation, which is required for translocation, initiation, and post-termination.
引用
收藏
页码:1631 / 1643
页数:13
相关论文
共 54 条
[1]   The cryo-EM structure of a translation initiation complex from Escherichia coli [J].
Allen, GS ;
Zavialov, A ;
Gursky, R ;
Ehrenberg, M ;
Frank, J .
CELL, 2005, 121 (05) :703-712
[2]   The evolutionary and functional diversity of classical and lesser-known cytoplasmic and organellar translational GTPases across the tree of life [J].
Atkinson, Gemma Catherine .
BMC GENOMICS, 2015, 16
[3]   The conserved GTPase LepA contributes mainly to translation initiation in Escherichia coli [J].
Balakrishnan, Rohan ;
Oman, Kenji ;
Shoji, Shinichiro ;
Bundschuh, Ralf ;
Fredrick, Kurt .
NUCLEIC ACIDS RESEARCH, 2014, 42 (21) :13370-13383
[4]   ACTIVITIES OF RIBOSOMAL CORES DEPRIVED OF PROTEINS L7, L10, L11 AND L12 [J].
BALLESTA, JP ;
VAZQUEZ, D .
FEBS LETTERS, 1974, 48 (02) :266-270
[5]   From structure and dynamics of protein L7/L12 to molecular switching in ribosome [J].
Bocharov, EV ;
Sobol, AG ;
Pavlov, KV ;
Korzhnev, DM ;
Jaravine, VA ;
Gudkov, AT ;
Arseniev, AS .
JOURNAL OF BIOLOGICAL CHEMISTRY, 2004, 279 (17) :17697-17706
[6]   REQUIREMENT FOR RIBOSOMAL-PROTEINS L7 AND L12 IN PEPTIDE-CHAIN TERMINATION [J].
BROT, N ;
TATE, WP ;
CASKEY, CT ;
WEISSBACH, H .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1974, 71 (01) :89-92
[7]   Atomic mutagenesis reveals A2660 of 23S ribosomal RNA as key to EF-G GTPase activation [J].
Clementi, Nina ;
Chirkova, Anna ;
Puffer, Barbara ;
Micura, Ronald ;
Polacek, Norbert .
NATURE CHEMICAL BIOLOGY, 2010, 6 (05) :344-351
[8]   A new tRNA intermediate revealed on the ribosome during EF4-mediated back-translocation [J].
Connell, Sean R. ;
Topf, Maya ;
Qin, Yan ;
Wilson, Daniel N. ;
Mielke, Thorsten ;
Fucini, Paola ;
Nierhaus, Knud H. ;
Spahn, Christian M. T. .
NATURE STRUCTURAL & MOLECULAR BIOLOGY, 2008, 15 (09) :910-915
[9]   A Novel Domain in Translational GTPase BipA Mediates Interaction with the 70S Ribosome and Influences GTP Hydrolysis [J].
deLivron, Megan A. ;
Makanji, Heeren S. ;
Lane, Maura C. ;
Robinson, Victoria L. .
BIOCHEMISTRY, 2009, 48 (44) :10533-10541
[10]   Mechanism and Rates of Exchange of L7/L12 between Ribosomes and the Effects of Binding EF-G [J].
Deroo, Stephanie ;
Hyung, Suk-Joon ;
Marcoux, Julien ;
Gordiyenko, Yuliya ;
Koripella, Ravi Kiran ;
Sanyal, Suparna ;
Robinson, Carol V. .
ACS CHEMICAL BIOLOGY, 2012, 7 (06) :1120-1127