Lake snow caused by the invasive diatom Lindavia intermedia can be discriminated from different sites and from other algae using vibrational spectroscopy

被引:9
作者
Ahmmed, Fatema [1 ]
Fraser-Miller, Sara J. [1 ]
Arachchige, Piumika Samanali Garagoda [1 ]
Schallenberg, Marc [2 ]
Novis, Phil [3 ]
Gordon, Keith C. [1 ]
机构
[1] Univ Otago, Dept Chem, Dunedin 9054, New Zealand
[2] Univ Otago, Dept Zool, Dunedin, New Zealand
[3] Allan Herbarium, Manaaki Whenua Landcare Res, Lincoln, New Zealand
关键词
algae; chemometrics; classification; Lindavia; Raman spectroscopy; FT-IR SPECTROSCOPY; RAMAN-SPECTROSCOPY; NUTRIENT STATUS; RED ALGAE; MICROSPECTROSCOPY; POLYSACCHARIDE; IDENTIFICATION; MICROALGAE; TOOL;
D O I
10.1002/jrs.6161
中图分类号
O433 [光谱学];
学科分类号
0703 ; 070302 ;
摘要
Lake snow refers to mucilaginous suspended material in lakes comprising of extracellular polysaccharides (EPS) and other components. The present study employed Raman and infrared (IR) spectroscopy to discriminate lake snow produced by the diatom Lindavia intermedia from different lakes (Wanaka, Wakatipu and Hawea) in New Zealand and from mucilaginous samples associated with other algae. It is possible to distinguish algal material including extracellular polymeric substances produced by L. intermedia and the genera Didymosphenia, Zygnema, Spirogyra and Nostoc. Furthermore, the study also explored the use of Raman spectroscopy for quantitative detection of lake snow suspended in a water column using partial least squares regression (PLSR). Thirty-three (33) samples (lake snow, 21; Didymosphenia, 3; Zygnema, 3; Spirogyra, 3; Nostoc, 3) were analysed using Raman and IR spectroscopy. The data analysis was carried out through support vector machine (SVM) and principal component analysis-linear discriminate analysis (PCA-LDA)-based classification methods. The SVM classification model provided better accuracy (100%) in species discrimination for both the calibration and full cross-validation sets compared to the accuracy (92%) obtained by the PCA-LDA model. The PCA analysis separated lake snow based on both sampling location and sampling depth. A partial least squares regression (PLSR) model was constructed using different dilutions (0.0001 to 0.0284 mg/ml) of lake snow suspension with two different spectral preprocessing methods (PP1, smoothing + SNV transformation; PP2, smoothing + RBC + SNV transformation) to investigate the ability of 1064 nm Raman in the quantification of suspended algal loading in the water column. The PLSR analysis with PP1 (smoothing + SNV transformation) demonstrated a better correlation coefficient (R-2) of 0.94 with lower RMSEcv of 0.2% compared to PP2 (R-2, 0.71; RMSEcv, 0.5%). Overall, the present study demonstrated the potential for Raman and IR spectroscopy to detect and distinguish differences within lake snow samples.
引用
收藏
页码:2597 / 2608
页数:12
相关论文
共 37 条
[31]   STRUCTURE AND INTERACTIONS OF PHYCOCYANOBILIN CHROMOPHORES IN PHYCOCYANIN AND ALLOPHYCOCYANIN FROM AN ANALYSIS OF THEIR RESONANCE RAMAN-SPECTRA [J].
SZALONTAI, B ;
GOMBOS, Z ;
CSIZMADIA, V ;
BAGYINKA, C ;
LUTZ, M .
BIOCHEMISTRY, 1994, 33 (39) :11823-11832
[32]   Combining FT-IR spectroscopy and multivariate analysis for qualitative and quantitative analysis of the cell wall composition changes during apples development [J].
Szymanska-Chargot, M. ;
Chylinska, M. ;
Kruk, B. ;
Zdunek, A. .
CARBOHYDRATE POLYMERS, 2015, 115 :93-103
[33]   Fourier transform infrared microspectroscopy as a tool to differentiate Nitzschia closterium and Nitzschia longissima [J].
Vardy, S ;
Uwins, P .
APPLIED SPECTROSCOPY, 2002, 56 (12) :1545-1548
[34]   Microbial colonization of halite from the hyper-arid Atacama Desert studied by Raman spectroscopy [J].
Vitek, P. ;
Edwards, H. G. M. ;
Jehlicka, J. ;
Ascaso, C. ;
De los Rios, A. ;
Valea, S. ;
Jorge-Villar, S. E. ;
Davila, A. F. ;
Wierzchos, J. .
PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY A-MATHEMATICAL PHYSICAL AND ENGINEERING SCIENCES, 2010, 368 (1922) :3205-3221
[35]   In vivo lipidomics using single-cell Raman spectroscopy [J].
Wu, Huawen ;
Volponi, Joanne V. ;
Oliver, Ann E. ;
Parikh, Atul N. ;
Simmons, Blake A. ;
Singh, Seema .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2011, 108 (09) :3809-3814
[36]   Preliminary Characterization, Antioxidant Properties and Production of Chrysolaminarin from Marine Diatom Odontella aurita [J].
Xia, Song ;
Gao, Baoyan ;
Li, Aifen ;
Xiong, Jihai ;
Ao, Ziqiang ;
Zhang, Chengwu .
MARINE DRUGS, 2014, 12 (09) :4883-4897
[37]  
?zer T., 2016, IOSR J PHARM BIOL SC, V11, P20, DOI [10.9790/3008-1106022027, DOI 10.9790/3008-1106022027]