Hybrid and bioactive cocrystals of pyrazinamide with hydroxybenzoic acids: Detailed study of structure, spectroscopic characteristics, other potential applications and noncovalent interactions using SAPT

被引:56
作者
Al-Otaibi, Jamelah S. [1 ]
Mary, Y. Sheena [2 ]
Armakovic, Stevan [3 ]
Thomas, Renjith [4 ]
机构
[1] Princess Nourah Bint Abdulrahman Univ, Coll Sci, Dept Chem, Riyadh, Saudi Arabia
[2] Fatima Mata Natl Coll Autonomous, Dept Phys, Kollam, Kerala, India
[3] Univ Novi Sad, Fac Sci, Dept Phys, Trg D Obradovica 4, Novi Sad 21000, Serbia
[4] St Berchmans Coll Autonomous, Dept Chem, Changanassery 686101, Kerala, India
关键词
Cocrystal; Pyrazinamide; Non-covalent interactions; LHE; DSSC; MOLECULAR-DYNAMICS SIMULATIONS; DENSITY-FUNCTIONAL THEORY; MAIN-GROUP THERMOCHEMISTRY; FT-IR; ELECTRONIC-STRUCTURE; OPTOELECTRONIC PROPERTIES; DISSOCIATION-ENERGIES; REACTIVE PROPERTIES; DOCKING ANALYSIS; FORCE-FIELD;
D O I
10.1016/j.molstruc.2019.127316
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
Three cocrystals of pyrazinamide (PYZ) with 2,4-dihydroxy benzoic acid (2,4HBA-PYZ), 2,6-dihydroxybenzoic acid (2,6HBA-PYZ) and 3,5-dihydroxybenzoic acid (3,5HBA-PYZ) are investigated by computational simulations. DFT calculations have been performed in order to understand the reactive properties of molecules that constitute the cocrystals. These calculations were followed by symmetry-adapted perturbation theory (SAPT) simulations to understand the interactions between molecules of the studied cocrystals. Molecular Dynamics (MD) simulations helped us to identify possible excipient substances. The ring vibrational modes have small variations during the cocrystal formation, while changes were observed in the peaks of the associated functional groups. Most reactive sites are identified by MEP maps. From the DFT analysis, we found that N-H center dot center dot center dot N intra molecular hydrogen between the N atom of pyrazine and H-N of amide produces conformational rigidity in the pyrazine ring in the co-crystal assembly of 2,4HBA-PYZ and 2,6HBA-PYZ but not for 3,5HBA-PYZ. The polarization nature of the functional groups was predicted by VCD spectra. Molecular docking results imply that the cocrystals might exhibit inhibitory activity against mycobacterium tuberculosis type II and against methylenetetrahydrofolate reductase and can be formulated as new anti-TB drug. The system showed fairly good light harvesting efficiency (LHE); hence, could be used in photovoltaic systems for energy conversion. Among the three cocrystal systems 2,4HBA-PYZ is a better candidate to be used in DSSC's. (C) 2019 Elsevier B.V. All rights reserved.
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页数:17
相关论文
共 102 条
[71]  
Politzer P, 1998, INT J QUANTUM CHEM, V69, P607, DOI 10.1002/(SICI)1097-461X(1998)69:4<607::AID-QUA18>3.0.CO
[72]  
2-W
[73]   MOLECULAR ELECTROSTATIC POTENTIALS - AN EFFECTIVE TOOL FOR THE ELUCIDATION OF BIOCHEMICAL PHENOMENA [J].
POLITZER, P ;
LAURENCE, PR ;
JAYASURIYA, K .
ENVIRONMENTAL HEALTH PERSPECTIVES, 1985, 61 (SEP) :191-202
[74]   Average local ionization energy: A review [J].
Politzer, Peter ;
Murray, Jane S. ;
Bulat, Felipe A. .
JOURNAL OF MOLECULAR MODELING, 2010, 16 (11) :1731-1742
[75]   Single crystal XRD, DFT investigations and molecular docking study of 2-((1,5-dimethyl-3-oxo-2-phenyl-2,3-dihydro-1H-pyrazol-4-yl)amino) naphthalene-1,4-dione as a potential anti- cancer lead molecule [J].
Rani, Kavitha P. R. ;
Mary, Y. Sheena ;
Fernandez, Annette ;
Priya, Anu S. ;
Mary, Y. Shyma ;
Thomas, Renjith .
COMPUTATIONAL BIOLOGY AND CHEMISTRY, 2019, 78 (153-164) :153-164
[76]   FT-IR and FT-Raman characterization and investigation of reactive properties of N-(3-iodo-4-methylphenyl)pyrazine-2-carboxamide by molecular dynamics simulations and DFT calculations [J].
Ranjith, P. K. ;
Al-Abdullah, Ebtehal S. ;
Al-Omary, Fatmah A. M. ;
El-Emam, Ali A. ;
Anto, P. L. ;
Sheena, Mary Y. ;
Armakovic, Stevan ;
Armakovic, Sanja J. ;
Zitko, Jan ;
Dolezal, Martin ;
Van Alsenoy, C. .
JOURNAL OF MOLECULAR STRUCTURE, 2017, 1136 :14-24
[77]  
Roeges NPG., 1994, GUIDE COMPLETE INTER
[79]   First-line antituberculosis drug, pyrazinamide, its pharmaceutically relevant cocrystals and a salt [J].
Sarmah, Kashyap Kumar ;
Rajbongshi, Trishna ;
Bhowmick, Sourav ;
Thakuria, Ranjit .
ACTA CRYSTALLOGRAPHICA SECTION B-STRUCTURAL SCIENCE CRYSTAL ENGINEERING AND MATERIALS, 2017, 73 :1007-1016
[80]  
Schrodinger, 2017, SCHROD REL 2017 4 MA