Reprogramming bacteriophage host range: design principles and strategies for engineering receptor binding proteins

被引:64
作者
Dunne, Matthew [1 ]
Prokhorov, Nikolai S. [2 ]
Loessner, Martin J. [1 ]
Leiman, Petr G. [2 ]
机构
[1] Swiss Fed Inst Technol, Inst Food Nutr & Hlth, Schmelzberg Str 7, CH-8092 Zurich, Switzerland
[2] Univ Texas Med Branch, Dept Biochem & Mol Biol, Sealy Ctr Struct Biol & Mol Biophys, 301 Univ Blvd, Galveston, TX 77555 USA
关键词
CRISPR-CAS; CRYSTAL-STRUCTURE; TAIL SPIKE; K5; LYASE; T2; PHAGE; TAILSPIKE; INFECTION; DOMAIN; T4; ENDOSIALIDASE;
D O I
10.1016/j.copbio.2021.02.006
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
Bacteriophages (phages) use specialized tail machinery to deliver proteins and genetic material into a bacterial cell during infection. Attached at the distal ends of their tails are receptor binding proteins (RBPs) that recognize specific molecules exposed on host bacteria surfaces. Since the therapeutic capacity of naturally occurring phages is often limited by narrow host ranges, there is significant interest in expanding their host range via directed evolution or structure-guided engineering of their RBPs. Here, we describe the design principles of different RBP engineering platforms and draw attention to the mechanisms linking RBP binding and the correct spatial and temporal attachment of the phage to the bacterial surface. A deeper understanding of these mechanisms will directly benefit future engineering of more effective phage-based therapeutics.
引用
收藏
页码:272 / 281
页数:10
相关论文
共 87 条
[1]   BASIC LOCAL ALIGNMENT SEARCH TOOL [J].
ALTSCHUL, SF ;
GISH, W ;
MILLER, W ;
MYERS, EW ;
LIPMAN, DJ .
JOURNAL OF MOLECULAR BIOLOGY, 1990, 215 (03) :403-410
[2]   Engineering Modular Viral Scaffolds for Targeted Bacterial Population Editing [J].
Ando, Hiroki ;
Lemire, Sebastien ;
Pires, Diana P. ;
Lu, Timothy K. .
CELL SYSTEMS, 2015, 1 (03) :187-196
[3]   Lessons Learned From the First 10 Consecutive Cases of Intravenous Bacteriophage Therapy to Treat Multidrug-Resistant Bacterial Infections at a Single Center in the United States [J].
Aslam, Saima ;
Lampley, Elizabeth ;
Wooten, Darcy ;
Karris, Maile ;
Benson, Constance ;
Strathdee, Steffanie ;
Schooley, Robert T. .
OPEN FORUM INFECTIOUS DISEASES, 2020, 7 (09)
[4]   Crystal structure of Escherichia coli phage HK620 tailspike:: podoviral tailspike endoglycosidase modules are evolutionarily related [J].
Barbirz, Stefanie ;
Mueller, Juergen J. ;
Uetrecht, Charlotte ;
Clark, Alvin J. ;
Heinemann, Udo ;
Seckler, Robert .
MOLECULAR MICROBIOLOGY, 2008, 69 (02) :303-316
[5]   Structure of the bacteriophage T4 long tail fiber receptor-binding tip [J].
Bartual, Sergio G. ;
Otero, Jose M. ;
Garcia-Doval, Carmela ;
Llamas-Saiz, Antonio L. ;
Kahn, Richard ;
Fox, Gavin C. ;
van Raaij, Mark J. .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2010, 107 (47) :20287-20292
[6]   Time-resolved DNA release from an O-antigen-specific Salmonella bacteriophage with a contractile tail [J].
Broeker, Nina K. ;
Roske, Yvette ;
Valleriani, Angelo ;
Stephan, Mareike S. ;
Andres, Dorothee ;
Koetz, Joachim ;
Heinemann, Udo ;
Barbirz, Stefanie .
JOURNAL OF BIOLOGICAL CHEMISTRY, 2019, 294 (31) :11751-11761
[7]   Not a barrier but a key: How bacteriophages exploit host's O-antigen as an essential receptor to initiate infection [J].
Broeker, Nina K. ;
Barbirz, Stefanie .
MOLECULAR MICROBIOLOGY, 2017, 105 (03) :353-357
[8]   Evidence for the Intense Exchange of MazG in Marine Cyanophages by Horizontal Gene Transfer [J].
Bryan, Michael J. ;
Burroughs, Nigel J. ;
Spence, Edward M. ;
Clokie, Martha R. J. ;
Mann, Nicholas H. ;
Bryan, Samantha J. .
PLOS ONE, 2008, 3 (04)
[9]  
Burmeister AR, 2020, CURR BIOL, V30, pR1120, DOI 10.1016/j.cub.2020.07.036
[10]   Directed in Vitro Evolution of Therapeutic Bacteriophages: The Appelmans Protocol [J].
Burrowes, Ben H. ;
Molineux, Ian J. ;
Fralick, Joe A. .
VIRUSES-BASEL, 2019, 11 (03)