Ribosome rearrangements at the onset of translational bypassing

被引:30
作者
Agirrezabala, Xabier [1 ]
Samatova, Ekaterina [2 ]
Klimova, Mariia [2 ]
Zamora, Miguel [1 ]
Gil-Carton, David [1 ]
Rodnina, Marina V. [2 ]
Valle, Mikel [1 ]
机构
[1] CIC BioGUNE, Struct Biol Unit, Derio 48160, Spain
[2] Max Planck Inst Biophys Chem, Dept Phys Biochem, D-37077 Gottingen, Germany
来源
SCIENCE ADVANCES | 2017年 / 3卷 / 06期
关键词
MESSENGER-RNA STRUCTURE; PEPTIDE-BOND FORMATION; STRUCTURAL BASIS; CRYSTAL-STRUCTURE; MOLECULAR-BASIS; ACTIVE-SITE; CODING GAP; TERMINATION; INSIGHTS; RELEASE;
D O I
10.1126/sciadv.1700147
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
Bypassing is a recoding event that leads to the translation of two distal open reading frames into a single polypeptide chain. We present the structure of a translating ribosome stalled at the bypassing take-off site of gene 60 of bacteriophage T4. The nascent peptide in the exit tunnel anchors the P-site peptidyl-tRNAGly to the ribosome and locks an inactive conformation of the peptidyl transferase center (PTC). The mRNA forms a short dynamic hairpin in the decoding site. The ribosomal subunits adopt a rolling conformation inwhich the rotation of the small subunit around its long axis causes the opening of the A-site region. Together, PTC conformation and mRNA structure safeguard against premature termination and read-through of the stop codon and reconfigure the ribosome to a state poised for take-off and sliding along the noncoding mRNA gap.
引用
收藏
页数:8
相关论文
共 53 条
[41]   Two distinct components of release factor function uncovered by nucleophile partitioning analysis [J].
Shaw, Jeffrey J. ;
Green, Rachel .
MOLECULAR CELL, 2007, 28 (03) :458-467
[42]   Structure of the Bacillus subtilis 70S ribosome reveals the basis for species-specific stalling [J].
Sohmen, Daniel ;
Chiba, Shinobu ;
Shimokawa-Chiba, Naomi ;
Innis, C. Axel ;
Berninghausen, Otto ;
Beckmann, Roland ;
Ito, Koreaki ;
Wilson, Daniel N. .
NATURE COMMUNICATIONS, 2015, 6
[43]   Structural Basis for Translation Termination on a Pseudouridylated Stop Codon [J].
Svidritskiy, Egor ;
Madireddy, Rohini ;
Korostelev, Andrei A. .
JOURNAL OF MOLECULAR BIOLOGY, 2016, 428 (10) :2228-2236
[44]   Secondary structure of bacteriophage T4 gene 60 mRNA: Implications for translational bypassing [J].
Todd, Gabrielle C. ;
Walter, Nils G. .
RNA, 2013, 19 (05) :685-700
[45]  
VARSHNEY U, 1991, J BIOL CHEM, V266, P24712
[46]   Insights into substrate stabilization from snapshots of the peptidyl transferase center of the intact 70S ribosome [J].
Voorhees, Rebecca M. ;
Weixlbaumer, Albert ;
Loakes, David ;
Kelley, Ann C. ;
Ramakrishnan, V. .
NATURE STRUCTURAL & MOLECULAR BIOLOGY, 2009, 16 (05) :528-533
[47]   A NASCENT PEPTIDE IS REQUIRED FOR RIBOSOMAL BYPASS OF THE CODING GAP IN BACTERIOPHAGE-T4 GENE-60 [J].
WEISS, RB ;
HUANG, WM ;
DUNN, DM .
CELL, 1990, 62 (01) :117-126
[48]   Insights into Translational Termination from the Structure of RF2 Bound to the Ribosome [J].
Weixlbaumer, Albert ;
Jin, Hong ;
Neubauer, Cajetan ;
Voorhees, Rebecca M. ;
Petry, Sabine ;
Kelley, Ann C. ;
Ramakrishnan, Venki .
SCIENCE, 2008, 322 (5903) :953-956
[49]   Translational bypassing without peptidyl-tRNA anticodon scanning of coding gap mRNA [J].
Wills, Norma M. ;
O'Connor, Michelle ;
Nelson, Chad C. ;
Rettberg, Charles C. ;
Huang, Wai Mun ;
Gesteland, Raymond F. ;
Atkins, John F. .
EMBO JOURNAL, 2008, 27 (19) :2533-2544
[50]  
Wills NM, 2010, NUCLEIC ACIDS MOL BI, V24, P365, DOI 10.1007/978-0-387-89382-2_17