Coupling mRNA Synthesis and Decay

被引:58
作者
Braun, Katherine A. [1 ]
Young, Elton T. [1 ]
机构
[1] Univ Washington, Dept Biochem, Seattle, WA 98195 USA
基金
美国国家卫生研究院;
关键词
SNF1; PROTEIN-KINASE; SACCHAROMYCES-CEREVISIAE; POLYMERASE-II; GENE-EXPRESSION; TRANSCRIPTION TERMINATION; GLUCOSE REPRESSION; POSTTRANSCRIPTIONAL REGULATION; PROCESSING FACTORS; PUF PROTEINS; YEAST;
D O I
10.1128/MCB.00535-14
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Posttranscriptional regulation of gene expression has an important role in defining the phenotypic characteristics of an organism. Well-defined steps in mRNA metabolism that occur in the nucleus-capping, splicing, and polyadenylation-are mechanistically linked to the process of transcription. Recent evidence suggests another link between RNA polymerase II ( Pol II) and a posttranscriptional process that occurs in the cytoplasm-mRNA decay. This conclusion appears to represent a conundrum. How could mRNA synthesis in the nucleus and mRNA decay in the cytoplasm be mechanistically linked? After a brief overview of mRNA processing, we will review the recent evidence for transcription-coupled mRNA decay and the possible involvement of Snf1, the Saccharomyces cerevisiae ortholog of AMP-activated protein kinase, in this process.
引用
收藏
页码:4078 / 4087
页数:10
相关论文
共 108 条
[1]   Phosphorylation of serine 2 within the RNA polymerase IIC-terminal domain couples transcription and 3′ end processing [J].
Ahn, SH ;
Kim, M ;
Buratowski, S .
MOLECULAR CELL, 2004, 13 (01) :67-76
[2]   Power of Yeast for Analysis of Eukaryotic Translation Initiation [J].
Altmann, Michael ;
Linder, Patrick .
JOURNAL OF BIOLOGICAL CHEMISTRY, 2010, 285 (42) :31907-31912
[3]   Global coordination of transcriptional control and mRNA decay during cellular differentiation [J].
Amorim, Maria J. ;
Cotobal, Cristina ;
Duncan, Caia ;
Mata, Juan .
MOLECULAR SYSTEMS BIOLOGY, 2010, 6
[4]   Structural and functional control of the eukaryotic mRNA decapping machinery [J].
Arribas-Layton, Marcos ;
Wu, Donghui ;
Lykke-Andersen, Jens ;
Song, Haiwei .
BIOCHIMICA ET BIOPHYSICA ACTA-GENE REGULATORY MECHANISMS, 2013, 1829 (6-7) :580-589
[5]   Polysomes, P bodies and stress granules: states and fates of eukaryotic mRNAs [J].
Balagopal, Vidya ;
Parker, Roy .
CURRENT OPINION IN CELL BIOLOGY, 2009, 21 (03) :403-408
[6]   The interaction of the cap-binding complex (CBC) with eIF4G is dispensable for translation in yeast [J].
Baron-Benhamou, J ;
Fortes, P ;
Inada, T ;
Preiss, T ;
Hentze, MW .
RNA, 2003, 9 (06) :654-662
[7]   Rules of engagement: co-transcriptional recruitment of pre-mRNA processing factors [J].
Bentley, DL .
CURRENT OPINION IN CELL BIOLOGY, 2005, 17 (03) :251-256
[8]   A specific catalytic subunit isoform of protein kinase CK2 is required for phosphorylation of the repressor Nrg1 in Saccharomyces cerevisiae [J].
Berkey, Cristin D. ;
Carlson, Marian .
CURRENT GENETICS, 2006, 50 (01) :1-10
[9]   Phosphoproteomic analysis identifies proteins involved in transcription-coupled mRNA decay as targets of Snf1 signaling [J].
Braun, Katherine A. ;
Vaga, Stefania ;
Dombek, Kenneth M. ;
Fang, Fang ;
Palmisano, Salvator ;
Aebersold, Ruedi ;
Young, Elton T. .
SCIENCE SIGNALING, 2014, 7 (333)
[10]   Promoter Elements Regulate Cytoplasmic mRNA Decay [J].
Bregman, Almog ;
Avraham-Kelbert, Moran ;
Barkai, Oren ;
Duek, Lea ;
Guterman, Adi ;
Choder, Mordechai .
CELL, 2011, 147 (07) :1473-1483