Differences in DNA Repair Capacity, Cell Death and Transcriptional Response after Irradiation between a Radiosensitive and a Radioresistant Cell Line

被引:40
作者
Borras-Fresneda, Mireia [1 ]
Barquinero, Joan-Francesc [2 ]
Gomolka, Maria [3 ]
Hornhardt, Sabine [3 ]
Roessler, Ute [3 ]
Armengol, Gemma [2 ]
Barrios, Leonardo [1 ]
机构
[1] Univ Autonoma Barcelona, Dept Biol Cellular Fisiol & Immunol, Unitat Biol Cellular, Bellaterra, Catalonia, Spain
[2] Univ Autonoma Barcelona, Dept Biol Anim Biol Vegetal & Ecol, Unitat Antropol Biol, Bellaterra, Catalonia, Spain
[3] Fed Off Radiat Protect, Dept Radiat Protect & Hlth, Neuherberg, Germany
关键词
RADIATION-INDUCED APOPTOSIS; NORMAL TISSUE-REACTIONS; HISTONE H2AX PHOSPHORYLATION; HUMAN LYMPHOBLASTOID-CELLS; STRAND BREAK REPAIR; GENE-EXPRESSION; CHROMOSOMAL RADIOSENSITIVITY; ATAXIA-TELANGIECTASIA; BLOOD-LYMPHOCYTES; CANCER-PATIENTS;
D O I
10.1038/srep27043
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
Normal tissue toxicity after radiotherapy shows variability between patients, indicating inter-individual differences in radiosensitivity. Genetic variation probably contributes to these differences. The aim of the present study was to determine if two cell lines, one radiosensitive (RS) and another radioresistant (RR), showed differences in DNA repair capacity, cell viability, cell cycle progression and, in turn, if this response could be characterised by a differential gene expression profile at different post-irradiation times. After irradiation, the RS cell line showed a slower rate of gamma-H2AX foci disappearance, a higher frequency of incomplete chromosomal aberrations, a reduced cell viability and a longer disturbance of the cell cycle when compared to the RR cell line. Moreover, a greater and prolonged transcriptional response after irradiation was induced in the RS cell line. Functional analysis showed that 24 h after irradiation genes involved in "DNA damage response", "direct p53 effectors" and apoptosis were still differentially up-regulated in the RS cell line but not in the RR cell line. The two cell lines showed different response to IR and can be distinguished with cell-based assays and differential gene expression analysis. The results emphasise the importance to identify biomarkers of radiosensitivity for tailoring individualized radiotherapy protocols.
引用
收藏
页数:11
相关论文
共 73 条
[1]   Human in vivo radiation-induced biomarkers:: Gene expression changes in radiotherapy patients [J].
Amundson, SA ;
Grace, MB ;
McLeland, CB ;
Epperly, MW ;
Yeager, A ;
Zhan, QM ;
Greenberger, JS ;
Fornace, AJ .
CANCER RESEARCH, 2004, 64 (18) :6368-6371
[2]   Integrating global gene expression and radiation survival parameters across the 60 cell lines of the National Cancer Institute Anticancer Drug Screen [J].
Amundson, Sally A. ;
Do, Khanh T. ;
Vinikoor, Lisa C. ;
Lee, R. Anthony ;
Koch-Paiz, Christine A. ;
Ahn, Jaeyong ;
Reimers, Mark ;
Chen, Yidong ;
Scudiero, Dominic A. ;
Weinstein, John N. ;
Trent, Jeffrey M. ;
Bittner, Michael L. ;
Meltzer, Paul S. ;
Fornace, Albert J., Jr. .
CANCER RESEARCH, 2008, 68 (02) :415-424
[3]   HTSeq-a Python']Python framework to work with high-throughput sequencing data [J].
Anders, Simon ;
Pyl, Paul Theodor ;
Huber, Wolfgang .
BIOINFORMATICS, 2015, 31 (02) :166-169
[4]   Count-based differential expression analysis of RNA sequencing data using R and Bioconductor [J].
Anders, Simon ;
McCarthy, Davis J. ;
Chen, Yunshun ;
Okoniewski, Michal ;
Smyth, Gordon K. ;
Huber, Wolfgang ;
Robinson, Mark D. .
NATURE PROTOCOLS, 2013, 8 (09) :1765-1786
[5]   Genetic variants and normal tissue toxicity after radiotherapy: A systematic review [J].
Andreassen, Christian Nicolaj ;
Alsner, Jan .
RADIOTHERAPY AND ONCOLOGY, 2009, 92 (03) :299-309
[6]   Does variability in normal tissue reactions after radiotherapy have a genetic basis - where and how to look for it? [J].
Andreassen, CN ;
Alsner, J ;
Overgaard, J .
RADIOTHERAPY AND ONCOLOGY, 2002, 64 (02) :131-140
[7]   Incorporating Genetic Biomarkers into Predictive Models of Normal Tissue Toxicity [J].
Barnett, G. C. ;
Kerns, S. L. ;
Noble, D. J. ;
Dunning, A. M. ;
West, C. M. L. ;
Burnet, N. G. .
CLINICAL ONCOLOGY, 2015, 27 (10) :579-587
[8]   Normal tissue reactions to radiotherapy: towards tailoring treatment dose by genotype [J].
Barnett, Gillian C. ;
West, Catherine M. L. ;
Dunning, Alison M. ;
Elliott, Rebecca M. ;
Coles, Charlotte E. ;
Pharoah, Paul D. P. ;
Burnet, Neil G. .
NATURE REVIEWS CANCER, 2009, 9 (02) :134-142
[9]   NCBI GEO: archive for functional genomics data sets-10 years on [J].
Barrett, Tanya ;
Troup, Dennis B. ;
Wilhite, Stephen E. ;
Ledoux, Pierre ;
Evangelista, Carlos ;
Kim, Irene F. ;
Tomashevsky, Maxim ;
Marshall, Kimberly A. ;
Phillippy, Katherine H. ;
Sherman, Patti M. ;
Muertter, Rolf N. ;
Holko, Michelle ;
Ayanbule, Oluwabukunmi ;
Yefanov, Andrey ;
Soboleva, Alexandra .
NUCLEIC ACIDS RESEARCH, 2011, 39 :D1005-D1010
[10]   Chromosome Damage and Cell Proliferation Rates in In Vitro Irradiated Whole Blood as Markers of Late Radiation Toxicity After Radiation Therapy to the Prostate [J].
Beaton, Lindsay A. ;
Ferrarotto, Catherine ;
Marro, Leonora ;
Samiee, Sara ;
Malone, Shawn ;
Grimes, Scott ;
Malone, Kyle ;
Wilkins, Ruth C. .
INTERNATIONAL JOURNAL OF RADIATION ONCOLOGY BIOLOGY PHYSICS, 2013, 85 (05) :1346-1352