Single-cell technologies are revolutionizing the approach to rare cells

被引:53
作者
Proserpio, Valentina [1 ,2 ]
Loennberg, Tapio [1 ,2 ]
机构
[1] Wellcome Trust Sanger Inst, Wellcome Trust Genome Campus, Cambridge, England
[2] EMBL, EBI, Wellcome Trust Genome Campus, Cambridge CB10 1SD, England
基金
欧洲研究理事会;
关键词
HEMATOPOIETIC STEM-CELL; MESSENGER-RNA-SEQ; GENE-EXPRESSION; TRANSCRIPTOME ANALYSIS; BLOOD STEM; T-CELLS; DE-NOVO; HETEROGENEITY; EPITHELIUM; LANDSCAPE;
D O I
10.1038/icb.2015.106
中图分类号
Q2 [细胞生物学];
学科分类号
071009 ; 090102 ;
摘要
In the last lustrum single-cell techniques such as single-cell quantitative PCR, RNA and DNA sequencing, and the state-of-the-art cytometry by time of flight (CyTOF) mass cytometer have allowed a detailed analysis of the sub-composition of different organs from the bone marrow hematopoietic compartment to the brain. These fine-grained analyses have highlighted the great heterogeneity within each cell compartment revealing previously unknown subpopulations of cells. In this review, we analyze how this fast technological evolution has improved our understanding of the biological processes with a particular focus on rare cells of the immune system.
引用
收藏
页码:225 / 229
页数:5
相关论文
共 53 条
[1]   The hematopoietic stem cell in its place [J].
Adams, GB ;
Scadden, DT .
NATURE IMMUNOLOGY, 2006, 7 (04) :333-337
[2]   Enumeration of human antigen-specific naive CD8+ T cells reveals conserved precursor frequencies [J].
Alanio, Cecile ;
Lemaitre, Fabrice ;
Law, Helen K. W. ;
Hasan, Milena ;
Albert, Matthew L. .
BLOOD, 2010, 115 (18) :3718-3725
[3]   Differential expression analysis for sequence count data [J].
Anders, Simon ;
Huber, Wolfgang .
GENOME BIOLOGY, 2010, 11 (10)
[4]   Functional heterogeneity of human memory CD4+ T cell clones primed by pathogens or vaccines [J].
Becattini, Simone ;
Latorre, Daniela ;
Mele, Federico ;
Foglierini, Mathilde ;
De Gregorio, Corinne ;
Cassotta, Antonino ;
Fernandez, Blanca ;
Kelderman, Sander ;
Schumacher, Ton N. ;
Corti, Davide ;
Lanzavecchia, Antonio ;
Sallusto, Federica .
SCIENCE, 2015, 347 (6220) :400-406
[5]   Single-Cell Trajectory Detection Uncovers Progression and Regulatory Coordination in Human B Cell Development [J].
Bendall, Sean C. ;
Davis, Kara L. ;
Amir, El-ad David ;
Tadmor, Michelle D. ;
Simonds, Erin F. ;
Chen, Tiffany J. ;
Shenfeld, Daniel K. ;
Nolan, Garry P. ;
Pe'er, Dana .
CELL, 2014, 157 (03) :714-725
[6]   A deep profiler's guide to cytometry [J].
Bendall, Sean C. ;
Nolan, Garry P. ;
Roederer, Mario ;
Chattopadhyay, Pratip K. .
TRENDS IN IMMUNOLOGY, 2012, 33 (07) :323-332
[7]   Hematopoietic Stem Cell Subtypes Expand Differentially during Development and Display Distinct Lymphopoietic Programs [J].
Benz, Claudia ;
Copley, Michael R. ;
Kent, David G. ;
Wohrer, Stefan ;
Cortes, Adrian ;
Aghaeepour, Nima ;
Ma, Elaine ;
Mader, Heidi ;
Rowe, Keegan ;
Day, Christopher ;
Treloar, David ;
Brinkman, Ryan R. ;
Eaves, Connie J. .
CELL STEM CELL, 2012, 10 (03) :273-283
[8]   Single-cell transcriptome analysis reveals coordinated ectopic gene-expression patterns in medullary thymic epithelial cells [J].
Brennecke, Philip ;
Reyes, Alejandro ;
Pinto, Sheena ;
Rattay, Kristin ;
Nguyen, Michelle ;
Kuechlert, Rita ;
Huber, Wolfgang ;
Kyewski, Bruno ;
Steinmetz, Lars M. .
NATURE IMMUNOLOGY, 2015, 16 (09) :933-941
[9]   Mouse Hematopoietic Stem Cell Identification and Analysis [J].
Challen, Grant A. ;
Boles, Nathan ;
Lin, Karen Kuan-Yin ;
Goodell, Margaret A. .
CYTOMETRY PART A, 2009, 75A (01) :14-24
[10]   T-CELL ANTIGEN RECEPTOR GENES AND T-CELL RECOGNITION [J].
DAVIS, MM ;
BJORKMAN, PJ .
NATURE, 1988, 334 (6181) :395-402