A RIPK1-regulated inflammatory microglial state in amyotrophic lateral sclerosis

被引:52
作者
Mifflin, Lauren [1 ]
Hu, Zhirui [2 ]
Dufort, Connor [3 ,4 ]
Hession, Cynthia C. [5 ]
Walker, Alec J. [3 ,4 ]
Niu, Kongyan [6 ]
Zhu, Hong [1 ]
Liu, Nan [6 ]
Liu, Jun S. [2 ]
Levin, Joshua Z. [5 ]
Stevens, Beth [3 ,4 ,5 ]
Yuan, Junying [1 ,6 ]
Zou, Chengyu [1 ,6 ]
机构
[1] Harvard Med Sch, Dept Cell Biol, Boston, MA 02115 USA
[2] Harvard Univ, Dept Stat, Cambridge, MA 02138 USA
[3] Boston Childrens Hosp, FM Kirby Neurobiol Ctr, Boston, MA 02115 USA
[4] Harvard Med Sch, Boston, MA 02115 USA
[5] Broad Inst MIT & Harvard, Stanley Ctr Psychiat Res, Klarman Cell Observ, Cambridge, MA 02142 USA
[6] Chinese Acad Sci, Interdisciplinary Res Ctr Biol & Chem, Shanghai Inst Organ Chem, Shanghai 201203, Peoples R China
关键词
RIPK1; ALS; microglia; neuroinflammation; scRNAseq;
D O I
10.1073/pnas.2025102118
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
Microglial-derived inflammation has been linked to a broad range of neurodegenerative and neuropsychiatric conditions, including amyotrophic lateral sclerosis (ALS). Using single-cell RNA sequencing, a class of Disease-Associated Microglia (DAMs) have been characterized in neurodegeneration. However, the DAM phenotype alone is insufficient to explain the functional complexity of microglia, particularly with regard to regulating inflammation that is a hallmark of many neurodegenerative diseases. Here, we identify a subclass of microglia in mouse models of ALS which we term RIPK1-Regulated Inflammatory Microglia (RRIMs). RRIMs show significant up-regulation of classical proinflammatory pathways, including increased levels of Tnf and Il1b RNA and protein. We find that RRIMs are highly regulated by TNF alpha signaling and that the prevalence of these microglia can be suppressed by inhibiting receptor-interacting protein kinase 1 (RIPK1) activity downstream of the TNF receptor 1. These findings help to elucidate a mechanism by which RIPK1 kinase inhibition has been shown to provide therapeutic benefit in mouse models of ALS and may provide an additional biomarker for analysis in ongoing phase 2 clinical trials of RIPK1 inhibitors in ALS.
引用
收藏
页数:11
相关论文
共 59 条
[1]   TNF neutralization in MS - Results of a randomized, placebo-controlled multicenter study [J].
Arnason, BGW ;
Jacobs, G ;
Hanlon, M ;
Clay, BH ;
Noronha, ABC ;
Auty, A ;
Davis, B ;
Nath, A ;
Bouchard, JP ;
Belanger, C ;
Gosselin, F ;
Thibault, M ;
Duquette, P ;
Bourgoin, P ;
DuBois, R ;
Girard, M ;
Ebers, GC ;
Rice, GPA ;
Vandervoort, MK ;
Francis, GS ;
Duncan, L ;
Lapierre, Y ;
Freedman, MS ;
Christie, SN ;
Rabinovitch, HE ;
Patry, D ;
Murphy, WF ;
Peters, S ;
McGuiness, SD ;
Murray, TJ ;
Bhan, V ;
Maxner, CE ;
Van Dorpe, R ;
Oger, JJ ;
Nelson, J ;
Morrison, W ;
Bogle, N ;
Beall, S ;
Vorobeychick, G ;
Hiltbrunner, AV ;
Bock, J ;
Habil ;
Lesslauer, W ;
Li, DKB ;
Paty, DW ;
Zhao, GJ .
NEUROLOGY, 1999, 53 (03) :457-465
[2]   The Cellular Composition and Glia-Neuron Ratio in the Spinal Cord of a Human and a Nonhuman Primate: Comparison With Other Species and Brain Regions [J].
Bahney, Jami ;
von Bartheld, Christopher S. .
ANATOMICAL RECORD-ADVANCES IN INTEGRATIVE ANATOMY AND EVOLUTIONARY BIOLOGY, 2018, 301 (04) :697-710
[3]   Isolation and culture of adult neurons and neurospheres [J].
Brewer, Gregory J. ;
Torricelli, John R. .
NATURE PROTOCOLS, 2007, 2 (06) :1490-1498
[4]   Integrating single-cell transcriptomic data across different conditions, technologies, and species [J].
Butler, Andrew ;
Hoffman, Paul ;
Smibert, Peter ;
Papalexi, Efthymia ;
Satija, Rahul .
NATURE BIOTECHNOLOGY, 2018, 36 (05) :411-+
[5]   CellProfiler: image analysis software for identifying and quantifying cell phenotypes [J].
Carpenter, Anne E. ;
Jones, Thouis Ray ;
Lamprecht, Michael R. ;
Clarke, Colin ;
Kang, In Han ;
Friman, Ola ;
Guertin, David A. ;
Chang, Joo Han ;
Lindquist, Robert A. ;
Moffat, Jason ;
Golland, Polina ;
Sabatini, David M. .
GENOME BIOLOGY, 2006, 7 (10)
[6]   Chemokines enhance immunity by guiding naive CD8+ T cells to sites of CD4 T cell-dendritic cell interaction [J].
Castellino, F ;
Huang, AY ;
Altan-Bonnet, G ;
Stoll, S ;
Scheinecker, C ;
Germain, RN .
NATURE, 2006, 440 (7086) :890-895
[7]   TNF and sTNFR1/2 plasma levels in ALS patients [J].
Cereda, Cristina ;
Baiocchi, Chiara ;
Bongioanni, Paolo ;
Cova, Emanuela ;
Guareschi, Stefania ;
Metelli, Maria Rita ;
Rossi, Bruno ;
Sbalsi, Ilaria ;
Cuccia, Maria Clara ;
Ceroni, Mauro .
JOURNAL OF NEUROIMMUNOLOGY, 2008, 194 (1-2) :123-131
[8]   A Neurodegeneration-Specific Gene-Expression Signature of Acutely Isolated Microglia from an Amyotrophic Lateral Sclerosis Mouse Model [J].
Chiu, Isaac M. ;
Morimoto, Emiko T. A. ;
Goodarzi, Hani ;
Liao, Jennifer T. ;
O'Keeffe, Sean ;
Phatnani, Hemali P. ;
Muratet, Michael ;
Carroll, Michael C. ;
Levy, Shawn ;
Tavazoie, Saeed ;
Myers, Richard M. ;
Maniatis, Tom .
CELL REPORTS, 2013, 4 (02) :385-401
[9]   A novel role for RIP1 kinase in mediating TNFα production [J].
Christofferson, D. E. ;
Li, Y. ;
Hitomi, J. ;
Zhou, W. ;
Upperman, C. ;
Zhu, H. ;
Gerber, S. A. ;
Gygi, S. ;
Yuan, J. .
CELL DEATH & DISEASE, 2012, 3 :e320-e320
[10]   Chemical inhibitor of nonapoptotic cell death with therapeutic potential for ischemic brain injury [J].
Degterev A. ;
Huang Z. ;
Boyce M. ;
Li Y. ;
Jagtap P. ;
Mizushima N. ;
Cuny G.D. ;
Mitchison T.J. ;
Moskowitz M.A. ;
Yuan J. .
Nature Chemical Biology, 2005, 1 (2) :112-119