The role of multi-omics in the diagnosis of COVID-19 and the prediction of new therapeutic targets

被引:11
作者
Ma, Jianli [1 ]
Deng, Yuwei [2 ]
Zhang, Minghui [3 ]
Yu, Jinming [1 ]
机构
[1] Shandong Univ, Dept Radiat Oncol, Canc Ctr, 440 Jiyan Rd, Jinan 250117, Shandong, Peoples R China
[2] Harbin Med Univ, Canc Hosp, Dept Breast Med Oncol, Harbin, Heilongjiang, Peoples R China
[3] Harbin Med Univ, Canc Hosp, Dept Resp Med Oncol, Harbin 150081, Heilongjiang, Peoples R China
关键词
COVID-19; multi-omics; genomics; transcriptomic; proteomics; metabolomics; SARS-COV-2; PATHOGENESIS; TMPRSS2; VIRUS; ACE2;
D O I
10.1080/21505594.2022.2092941
中图分类号
R392 [医学免疫学]; Q939.91 [免疫学];
学科分类号
100102 ;
摘要
The global pandemic of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2), the virus causing COVID-19, has led to more than 170 million confirmed cases in 223 countries and regions, claiming 3,872,457 lives. Some patients with COVID-19 have mild clinical symptoms despite severe respiratory failure, which greatly increases the difficulty of diagnosis and treatment. It is therefore necessary to identify biological characteristics of SARS-CoV-2, screen novel diagnostic and prognostic biomarkers, as well as to explore potential therapeutic targets for COVID-19. In this comprehensive review, we discuss the current published literature on COVID-19. We find that the comprehensive application of genomics, transcriptomics, proteomics and metabolomics is becoming increasingly important in the treatment of COVID-19. Multi-omics analysis platforms are expected to revolutionize the diagnosis and classification of COVID-19. This review aims to provide a reference for diagnosis, surveillance and clinical decision making related to COVID-19.
引用
收藏
页码:1101 / 1110
页数:10
相关论文
共 69 条
[51]   Multi-Omics Resolves a Sharp Disease-State Shift between Mild and Moderate COVID-19 [J].
Su, Yapeng ;
Chen, Daniel ;
Yuan, Dan ;
Lausted, Christopher ;
Choi, Jongchan ;
Dai, Chengzhen L. ;
Voillet, Valentin ;
Duvvuri, Venkata R. ;
Scherler, Kelsey ;
Troisch, Pamela ;
Baloni, Priyanka ;
Qin, Guangrong ;
Smith, Brett ;
Kornilov, Sergey A. ;
Rostomily, Clifford ;
Xu, Alex ;
Li, Jing ;
Dong, Shen ;
Rothchild, Alissa ;
Zhou, Jing ;
Murray, Kim ;
Edmark, Rick ;
Hong, Sunga ;
Heath, John E. ;
Earls, John ;
Zhang, Rongyu ;
Xie, Jingyi ;
Li, Sarah ;
Roper, Ryan ;
Jones, Lesley ;
Zhou, Yong ;
Rowen, Lee ;
Liu, Rachel ;
Mackay, Sean ;
O'Mahony, D. Shane ;
Dale, Christopher R. ;
Wallick, Julie A. ;
Algren, Heather A. ;
Zager, Michael A. ;
Wei, Wei ;
Price, Nathan D. ;
Huang, Sui ;
Subramanian, Naeha ;
Wang, Kai ;
Magis, Andrew T. ;
Hadlock, Jenn J. ;
Hood, Leroy ;
Aderem, Alan ;
Bluestone, Jeffrey A. ;
Lanier, Lewis L. .
CELL, 2020, 183 (06) :1479-+
[52]   Diagnosis of COVID-19 for controlling the pandemic: A review of the state-of-the-art [J].
Taleghani, Nastaran ;
Taghipour, Fariborz .
BIOSENSORS & BIOELECTRONICS, 2021, 174
[53]   The noncoding and coding transcriptional landscape of the peripheral immune response in patients with COVID-19 [J].
Tang, Hao ;
Gao, Yuehan ;
Li, Zhaohuai ;
Miao, Yushan ;
Huang, Zhaohao ;
Liu, Xiuxing ;
Xie, Lihui ;
Li, He ;
Wen, Wen ;
Zheng, Yingfeng ;
Su, Wenru .
CLINICAL AND TRANSLATIONAL MEDICINE, 2020, 10 (06)
[54]   Endocrinology Meets Metabolomics: Achievements, Pitfalls, and Challenges [J].
Tokarz, Janina ;
Haid, Mark ;
Cecil, Alexander ;
Prehn, Cornelia ;
Artati, Anna ;
Moeller, Gabriele ;
Adamski, Jerzy .
TRENDS IN ENDOCRINOLOGY AND METABOLISM, 2017, 28 (10) :705-721
[55]   Rapid reconstruction of SARS-CoV-2 using a synthetic genomics platform [J].
Tran Thi Nhu Thao ;
Labroussaa, Fabien ;
Ebert, Nadine ;
V'kovski, Philip ;
Stalder, Hanspeter ;
Portmann, Jasmine ;
Kelly, Jenna ;
Steiner, Silvio ;
Holwerda, Melle ;
Kratzel, Annika ;
Gultom, Mitra ;
Schmied, Kimberly ;
Laloli, Laura ;
Huesser, Linda ;
Wider, Manon ;
Pfaender, Stephanie ;
Hirt, Dagny ;
Cippa, Valentina ;
Crespo-Pomar, Silvia ;
Schroeder, Simon ;
Muth, Doreen ;
Niemeyer, Daniela ;
Corman, Victor M. ;
Mueller, Marcel A. ;
Drosten, Christian ;
Dijkman, Ronald ;
Jores, Joerg ;
Thiel, Volker .
NATURE, 2020, 582 (7813) :561-+
[56]   Coronavirus biology and replication: implications for SARS-CoV-2 [J].
V'kovski, Philip ;
Kratzel, Annika ;
Steiner, Silvio ;
Stalder, Hanspeter ;
Thiel, Volker .
NATURE REVIEWS MICROBIOLOGY, 2021, 19 (03) :155-170
[57]   Remdesivir in adults with severe COVID-19: a randomised, double-blind, placebo-controlled, multicentre trial [J].
Wang, Yeming ;
Zhang, Dingyu ;
Du, Guanhua ;
Du, Ronghui ;
Zhao, Jianping ;
Jin, Yang ;
Fu, Shouzhi ;
Gao, Ling ;
Cheng, Zhenshun ;
Lu, Qiaofa ;
Hu, Yi ;
Luo, Guangwei ;
Wang, Ke ;
Lu, Yang ;
Li, Huadong ;
Wang, Shuzhen ;
Ruan, Shunan ;
Yang, Chengqing ;
Mei, Chunlin ;
Wang, Yi ;
Ding, Dan ;
Wu, Feng ;
Tang, Xin ;
Ye, Xianzhi ;
Ye, Yingchun ;
Liu, Bing ;
Yang, Jie ;
Yin, Wen ;
Wang, Aili ;
Fan, Guohui ;
Zhou, Fei ;
Liu, Zhibo ;
Gu, Xiaoying ;
Xu, Jiuyang ;
Shang, Lianhan ;
Zhang, Yi ;
Cao, Lianjun ;
Guo, Tingting ;
Wan, Yan ;
Qin, Hong ;
Jiang, Yushen ;
Jaki, Thomas ;
Hayden, Frederick G. ;
Horby, Peter W. ;
Cao, Bin ;
Wang, Chen .
LANCET, 2020, 395 (10236) :1569-1578
[58]   Rapid Direct Nucleic Acid Amplification Test without RNA Extraction for SARS-CoV-2 Using a Portable PCR Thermocycler [J].
Wee, Soon Keong ;
Sivalingam, Suppiah Paramalingam ;
Yap, Eric Peng Huat .
GENES, 2020, 11 (06) :1-13
[59]   COVID-19 Antibody Tests: A Valuable Public Health Tool with Limited Relevanace to Individuals [J].
West, Rachel ;
Kobokovich, Amanda ;
Connell, Nancy ;
Gronvall, Gigi Kwik .
TRENDS IN MICROBIOLOGY, 2021, 29 (03) :214-223
[60]  
who, NOV COR 2019 SIT REP