Deciphering the Structural Basis of High Thermostability of Dehalogenase from Psychrophilic Bacterium Marinobacter sp. ELB17

被引:16
作者
Chrast, Lukas [1 ]
Tratsiak, Katsiaryna [2 ,3 ,4 ]
Planas-Iglesias, Joan [1 ]
Daniel, Lukas [1 ]
Prudnikova, Tatyana [2 ,3 ]
Brezovsky, Jan [1 ,5 ]
Bednar, David [1 ,5 ]
Smatanova, Ivana Kuta [2 ,3 ]
Chaloupkova, Radka [1 ,6 ]
Damborsky, Jiri [1 ,5 ]
机构
[1] Masaryk Univ, Fac Sci, Dept Expt Biol & RECETOX, Loschmidt Labs, Kamenice 5-A13, Brno 62500, Czech Republic
[2] Univ South Bohemia Ceske Budejovice, Fac Sci, Inst Chem & Biochem, Branisovska 1760, Czech Republic
[3] Microbiol Acad Sci Czech Republ, Branisovska 1760, Czech Republic
[4] Czech Acad Sci, Vvi, Inst Organ Chem & Biochem, Flemingovo Nam 2, Prague 16610 6, Czech Republic
[5] St Annes Univ Hosp, Int Clin Res Ctr, Pekarska 53, Brno 65691, Czech Republic
[6] Enantis Ltd, Biotechnol Incubator INBIT, Kamenice 771-34, Brno 62500, Czech Republic
关键词
haloalkane dehalogenase; thermostability; psychrophile; access tunnel; dimer; catalytic pentad; enantiselectivity; MOLECULAR-DYNAMICS SIMULATIONS; CYTOPHAGA SP KUC-1; HALOALKANE DEHALOGENASES; MARINE PSYCHROPHILE; ENZYME; DEHYDROGENASE; STABILITY; SERVER; MODEL; SPECIFICITY;
D O I
10.3390/microorganisms7110498
中图分类号
Q93 [微生物学];
学科分类号
071005 ; 100705 ;
摘要
Haloalkane dehalogenases are enzymes with a broad application potential in biocatalysis, bioremediation, biosensing and cell imaging. The new haloalkane dehalogenase DmxA originating from the psychrophilic bacterium Marinobacter sp. ELB17 surprisingly possesses the highest thermal stability (apparent melting temperature T-m,T-app = 65.9 degrees C) of all biochemically characterized wild type haloalkane dehalogenases belonging to subfamily II. The enzyme was successfully expressed and its crystal structure was solved at 1.45 angstrom resolution. DmxA structure contains several features distinct from known members of haloalkane dehalogenase family: (i) a unique composition of catalytic residues; (ii) a dimeric state mediated by a disulfide bridge; and (iii) narrow tunnels connecting the enzyme active site with the surrounding solvent. The importance of narrow tunnels in such paradoxically high stability of DmxA enzyme was confirmed by computational protein design and mutagenesis experiments.
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页数:20
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