Density propagation based adaptive multi-density clustering algorithm

被引:11
作者
Wang, Yizhang [1 ,2 ]
Pang, Wei [3 ]
Zhou, You [1 ,2 ]
机构
[1] Jilin Univ, Coll Comp Sci & Technol, Changchun, Jilin, Peoples R China
[2] Minist Educ, Key Lab Symbol Computat & Knowledge Engn, Changchun, Jilin, Peoples R China
[3] Univ Aberdeen, Dept Comp Sci, Aberdeen, Scotland
来源
PLOS ONE | 2018年 / 13卷 / 07期
基金
中国国家自然科学基金; 英国工程与自然科学研究理事会;
关键词
AFFINITY PROPAGATION; FAST SEARCH; PEAKS; SYSTEM; FIND;
D O I
10.1371/journal.pone.0198948
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
The performance of density based clustering algorithms may be greatly influenced by the chosen parameter values, and achieving optimal or near optimal results very much depends on empirical knowledge obtained from previous experiments. To address this limitation, we propose a novel density based clustering algorithm called the Density Propagation based Adaptive Multi-density clustering (DPAM) algorithm. DPAM can adaptively cluster spatial data. In order to avoid manual intervention when choosing parameters of density clustering and still achieve high performance, DPAM performs clustering in three stages: (1) generate the micro-clusters graph, (2) density propagation with redefinition of between-class margin and intra-class cohesion, and (3) calculate regional density. Experimental results demonstrated that DPAM could achieve better performance than several state-of-the-art density clustering algorithms in most of the tested cases, the ability of no parameters needing to be adjusted enables the proposed algorithm to achieve promising performance.
引用
收藏
页数:13
相关论文
共 26 条
[11]   Evolving Spatial Clusters of Genomic Regions From High-Throughput Chromatin Conformation Capture Data [J].
Li, Xiangtao ;
Ma, Shijing ;
Wong, Ka-Chun .
IEEE TRANSACTIONS ON NANOBIOSCIENCE, 2017, 16 (06) :400-407
[12]   Urban mapping using DMSP/OLS stable night-time light: a review [J].
Li, Xuecao ;
Zhou, Yuyu .
INTERNATIONAL JOURNAL OF REMOTE SENSING, 2017, 38 (21) :6030-6046
[13]   Adaptive Partitioning by Local Density-Peaks: An Efficient Density-Based Clustering Algorithm for Analyzing Molecular Dynamics Trajectories [J].
Liu, Song ;
Zhu, Lizhe ;
Sheong, Fu Kit ;
Wang, Wei ;
Huang, Xuhui .
JOURNAL OF COMPUTATIONAL CHEMISTRY, 2017, 38 (03) :152-160
[14]   Clustering by fast search and find of density peaks via heat diffusion [J].
Mehmood, Rashid ;
Zhang, Guangzhi ;
Bie, Rongfang ;
Dawood, Hassan ;
Ahmad, Haseeb .
NEUROCOMPUTING, 2016, 208 :210-217
[15]  
Patwary M.M. A., 2012, HIGH PERFORMANCE COM, P1, DOI DOI 10.1109/SC.2012.9
[16]   An Enhanced Density Based Spatial Clustering of Applications with Noise [J].
Ram, Anant ;
Sharma, Ashish ;
Jalal, Anand S. ;
Singh, Raghuraj ;
Agrawal, Ankur .
2009 IEEE INTERNATIONAL ADVANCE COMPUTING CONFERENCE, VOLS 1-3, 2009, :1475-+
[17]  
Rehioui H, 2016, INT C BIG DAT ADV WI, P1
[18]   Clustering by fast search and find of density peaks [J].
Rodriguez, Alex ;
Laio, Alessandro .
SCIENCE, 2014, 344 (6191) :1492-1496
[19]  
Tan Y, 2010, LECT NOTES COMPUT SC, V6145, P355
[20]   Data clustering using particle swarm optimization [J].
van der Merwe, D ;
Engelbrecht, AP .
CEC: 2003 CONGRESS ON EVOLUTIONARY COMPUTATION, VOLS 1-4, PROCEEDINGS, 2003, :215-220