Vibrational spectroscopy of a non-aromatic amino acid-based model peptide:: identification of the γ-turn motif of the peptide backbone

被引:46
作者
Compagnon, I
Oomens, J
Bakker, J
Meijer, G
von Helden, G
机构
[1] EURATOM, FOM, Inst Plasma Phys Rijnhuizen, NL-3439 MN Nieuwegein, Netherlands
[2] Max Planck Gesell, Fritz Haber Inst, D-14195 Berlin, Germany
关键词
D O I
10.1039/b417204c
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
The first infrared hole burning spectrum of a gas-phase neutral peptide not containing an aromatic amino acid is presented. In the model peptide Z-Pro-NHMe, the amide I and II bands in the 1500 - 1800 cm(-1) region appear to be a clear diagnostic for the secondary structure of the backbone, while the analysis of a series of coupled CH bending modes in the 1000 - 1500 cm(-1) region allows to distinguish between different possible orientations of the chromophore. The geometry of the peptide is strongly constrained by the proline and only one conformation of the backbone is observed, which is identified as a hydrogen bonded gamma-turn.
引用
收藏
页码:13 / 15
页数:3
相关论文
共 23 条
  • [1] Fingerprint IR spectroscopy to probe amino acid conformations in the gas phase
    Bakker, JM
    Aleese, LM
    Meijer, G
    von Helden, G
    [J]. PHYSICAL REVIEW LETTERS, 2003, 91 (20)
  • [2] What vibrations tell us about proteins
    Barth, A
    Zscherp, C
    [J]. QUARTERLY REVIEWS OF BIOPHYSICS, 2002, 35 (04) : 369 - 430
  • [3] Competition between local conformational preferences and secondary structures in gas-phase model tripeptides as revealed by laser spectroscopy and theoretical chemistry
    Chin, W
    Mons, M
    Dognon, JP
    Piuzzi, F
    Tardivel, B
    Dimicoli, I
    [J]. PHYSICAL CHEMISTRY CHEMICAL PHYSICS, 2004, 6 (10) : 2700 - 2709
  • [4] The infrared and ultraviolet spectra of single conformations of methyl-capped dipeptides: N-acetyl tryptophan amide and N-acetyl tryptophan methyl amide
    Dian, BC
    Longarte, A
    Mercier, S
    Evans, DA
    Wales, DJ
    Zwier, TS
    [J]. JOURNAL OF CHEMICAL PHYSICS, 2002, 117 (23) : 10688 - 10702
  • [5] Vibrational spectroscopy of small-sized hydrogen-bonded clusters and their ions
    Ebata, T
    Fujii, A
    Mikami, N
    [J]. INTERNATIONAL REVIEWS IN PHYSICAL CHEMISTRY, 1998, 17 (03) : 331 - 361
  • [6] Frisch M.J., 2004, Gaussian 03
  • [7] Revision C.02
  • [8] β-sheet model systems in the gas phase:: Structures and vibrations of Ac-Phe-NHMe and its dimer (Ac-Phe-NHMe)2
    Gerhards, M
    Unterberg, C
    Gerlach, A
    Jansen, A
    [J]. PHYSICAL CHEMISTRY CHEMICAL PHYSICS, 2004, 6 (10) : 2682 - 2690
  • [9] Structure of a β-sheet model system in the gas phase:: Analysis of the C=O stretching vibrations
    Gerhards, M
    Unterberg, C
    Gerlach, A
    [J]. PHYSICAL CHEMISTRY CHEMICAL PHYSICS, 2002, 4 (22) : 5563 - 5565
  • [10] Conformers of the peptides glycine-tryptophan, tryptophan-glycine and tryptophan-glycine-glycine as revealed by double resonance laser spectroscopy
    Hünig, I
    Kleinermanns, K
    [J]. PHYSICAL CHEMISTRY CHEMICAL PHYSICS, 2004, 6 (10) : 2650 - 2658