Highly Repeatable Dissolution Dynamic Nuclear Polarization for Heteronuclear NMR Metabolomics

被引:50
作者
Bornet, Aurelien [1 ]
Maucourt, Mickael [2 ,3 ]
Deborde, Catherine [2 ,4 ]
Jacob, Daniel [2 ,4 ]
Milani, Jonas [1 ]
Vuichaud, Basile [1 ]
Ji, Xiao [1 ]
Dumez, Jean-Nicolas [5 ]
Moing, Annick [2 ,4 ]
Bodenhausen, Geoffrey [1 ,6 ,7 ,8 ]
Jannin, Sami [1 ]
Giraudeau, Patrick [9 ,10 ]
机构
[1] Ecole Polytech Fed Lausanne, Inst Sci & Ingn Chim, CH-1015 Lausanne, Switzerland
[2] Ctr INRA Bordeaux, IBVM, Ctr Genom Fonct Bordeaux, Plateforme Metabolome Bordeaux MetaboHUB, F-33140 Villenave Dornon, France
[3] Univ Bordeaux, UMR Biol Fruit & Pathol 1332, Ctr INRA Bordeaux, F-33140 Villenave Dornon, France
[4] INRA, UMR Biol Fruit & Pathol 1332, Ctr INRA Bordeaux, F-33140 Villenave Dornon, France
[5] Univ Paris Saclay, Univ Paris 11, CNRS, Inst Chim Subst Nat,UPR 2301, F-91190 Gif Sur Yvette, France
[6] Paris Sci Lettres PSL Res Univ, ENS, Dept Chim, F-75005 Paris, France
[7] Sorbonne Univ, Univ Paris 06, Lab Biomol LBM, F-75005 Paris, France
[8] CNRS, UMR 7203, Lab Biomol LBM, F-75005 Paris, France
[9] Univ Nantes, CNRS, CEISAM UMR 6230, F-44322 Nantes 03, France
[10] Inst Univ France, F-75005 Paris, France
基金
欧洲研究理事会; 瑞士国家科学基金会;
关键词
NATURAL-ABUNDANCE; SPECTROSCOPY; EXTRACTS; SPECTRA; PLANT;
D O I
10.1021/acs.analchem.6b01094
中图分类号
O65 [分析化学];
学科分类号
070302 ; 081704 ;
摘要
At natural C-13 abundance, metabolomics based on heteronuclear NMR is limited by sensitivity. We have recently demonstrated how hyperpolarization by dissolution dynamic nuclear polarization (D-DNP) assisted by cross-polarization (CP) provides a reliable way of enhancing the sensitivity of heteronudear NMR in dilute mixtures of metabolites. In this Technical Note, we evaluate the precision of this experimental approach, a critical point for applications to metabolomics. The higher the repeatability, the greater the likelihood that one can detect small biologically relevant differences between samples. The average repeatability of our state-of-the-art D-DNP NMR equipment for samples of metabolomic relevance (20 mg dry weight tomato extracts) is 3.6% for signals above the limit of quantification (LOQ) and 6.4% when all the signals above the limit of detection (LOD) are taken into account. This first report on the repeatability of D-DNP highlights the compatibility of the technique with the requirements of metabolomics and confirms its potential as an analytical tool for such applications.
引用
收藏
页码:6179 / 6183
页数:5
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共 19 条
  • [1] PLANT METABOLOMICS AND ITS POTENTIAL FOR SYSTEMS BIOLOGY RESEARCH: BACKGROUND CONCEPTS, TECHNOLOGY, AND METHODOLOGY
    Allwood, J. William
    De Vos, Ric C. H.
    Moing, Annick
    Deborde, Catherine
    Erban, Alexander
    Kopka, Joachim
    Goodacre, Royston
    Hall, Robert D.
    [J]. METHODS IN ENZYMOLOGY, VOL 500: METHODS IN SYSTEMS BIOLOGY, 2011, 500 : 299 - 336
  • [2] Increase in signal-to-noise ratio of >10,000 times in liquid-state NMR
    Ardenkjaer-Larsen, JH
    Fridlund, B
    Gram, A
    Hansson, G
    Hansson, L
    Lerche, MH
    Servin, R
    Thaning, M
    Golman, K
    [J]. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2003, 100 (18) : 10158 - 10163
  • [3] Metabolic profiling, metabolomic and metabonomic procedures for NMR spectroscopy of urine, plasma, serum and tissue extracts
    Beckonert, Olaf
    Keun, Hector C.
    Ebbels, Timothy M. D.
    Bundy, Jacob G.
    Holmes, Elaine
    Lindon, John C.
    Nicholson, Jeremy K.
    [J]. NATURE PROTOCOLS, 2007, 2 (11) : 2692 - 2703
  • [4] Metabolomic profiling in tomato reveals diel compositional changes in fruit affected by source-sink relationships
    Benard, Camille
    Bernillon, Stephane
    Biais, Benoit
    Osorio, Sonia
    Maucourt, Mickael
    Ballias, Patricia
    Deborde, Catherine
    Colombie, Sophie
    Cabasson, Cecile
    Jacob, Daniel
    Vercambre, Gilles
    Gautier, Helene
    Rolin, Dominique
    Genard, Michel
    Fernie, Alisdair R.
    Gibon, Yves
    Moing, Annick
    [J]. JOURNAL OF EXPERIMENTAL BOTANY, 2015, 66 (11) : 3391 - 3404
  • [5] Boosting Dissolution Dynamic Nuclear Polarization by Cross Polarization
    Bornet, Aurelien
    Melzi, Roberto
    Linde, Angel J. Perez
    Hautle, Patrick
    van den Brandt, Ben
    Jannin, Sami
    Bodenhausen, Geoffrey
    [J]. JOURNAL OF PHYSICAL CHEMISTRY LETTERS, 2013, 4 (01): : 111 - 114
  • [6] The Human Urine Metabolome
    Bouatra, Souhaila
    Aziat, Farid
    Mandal, Rupasri
    Guo, An Chi
    Wilson, Michael R.
    Knox, Craig
    Bjorndahl, Trent C.
    Krishnamurthy, Ramanarayan
    Saleem, Fozia
    Liu, Philip
    Dame, Zerihun T.
    Poelzer, Jenna
    Huynh, Jessica
    Yallou, Faizath S.
    Psychogios, Nick
    Dong, Edison
    Bogumil, Ralf
    Roehring, Cornelia
    Wishart, David S.
    [J]. PLOS ONE, 2013, 8 (09):
  • [7] Implementation and Characterization of Flow Injection in Dissolution Dynamic Nuclear Polarization NMR Spectroscopy
    Chen, Hsueh-Ying
    Hilty, Christian
    [J]. CHEMPHYSCHEM, 2015, 16 (12) : 2646 - 2652
  • [8] 13C NMR Metabolomics: Applications at Natural Abundance
    Clendinen, Chaevien S.
    Lee-McMullen, Brittany
    Williams, Caroline M.
    Stupp, Gregory S.
    Vandenborne, Krista
    Hahn, Daniel A.
    Walter, Glenn A.
    Edison, Arthur S.
    [J]. ANALYTICAL CHEMISTRY, 2014, 86 (18) : 9242 - 9250
  • [9] Combined NMR and LC-MS Analysis Reveals the Metabonomic Changes in Salvia miltiorrhiza Bunge Induced by Water Depletion
    Dai, Hui
    Xiao, Chaoni
    Liu, Hongbing
    Tang, Huiru
    [J]. JOURNAL OF PROTEOME RESEARCH, 2010, 9 (03) : 1460 - 1475
  • [10] Hyperpolarized NMR of plant and cancer cell extracts at natural abundance
    Dumez, Jean-Nicolas
    Milani, Jonas
    Vuichoud, Basile
    Bornet, Aurelien
    Lalande-Martin, Julie
    Tea, Illa
    Yon, Maxime
    Maucourt, Mickael
    Deborde, Catherine
    Moing, Annick
    Frydman, Lucio
    Bodenhausen, Geoffrey
    Jannin, Sami
    Giraudeau, Patrick
    [J]. ANALYST, 2015, 140 (17) : 5860 - 5863