Molecular Networking-Based Screening Led to the Discovery of a Cyclic Heptadepsipeptide from an Endolichenic Xylaria sp

被引:19
作者
Luo, Mengna [1 ]
Chang, Shanshan [1 ]
Li, Yihong [1 ]
Xi, Xiaoming [2 ]
Chen, Minghua [2 ]
He, Ning [1 ]
Wang, Mengyuan [1 ]
Zhao, Wuli [2 ]
Xie, Yunying [1 ]
机构
[1] Chinese Acad Med Sci & Peking Union Med Coll, CAMS Key Lab Synthet Biol Drug Innovat, Beijing 100050, Peoples R China
[2] Chinese Acad Med Sci & Peking Union Med Coll, Inst Med Biotechnol, NHC Key Lab Biotechnol Antibiot, Beijing 100050, Peoples R China
来源
JOURNAL OF NATURAL PRODUCTS | 2022年 / 85卷 / 04期
基金
中国国家自然科学基金;
关键词
CONSTITUENT AMINO-ACIDS; ABSOLUTE-CONFIGURATION; MARFEYS METHOD; ELUCIDATION; LC/MS;
D O I
10.1021/acs.jnatprod.1c01108
中图分类号
Q94 [植物学];
学科分类号
071001 ;
摘要
MS/MS-based molecular networking strain prioritization led to the discovery of a group of cyclic depsipeptides from an endolichenic Xylaria sp. The main component, xylaroamide A (1), was obtained by LC-MS-guided isolation. The planar structure of compound 1 was elucidated via ID and 2D NMR, as well as MS/MS data. The configurations were fully determined by the combination of advanced Marfey's analysis, partial hydrolysis, Mosher's reaction, and GIAO NMR calculation based on a restricted conformational search. A plausible biosynthetic pathway for xylaroamide A (1) involving a rare trans-acting N-methyltransferase is proposed based on bioinformatics analysis. Xylaroamide A (1) exhibited inhibitory activity against cancer cell lines BT-549 and RKO with IC50 values of 2.5 and 9.5 mu M, respectively.
引用
收藏
页码:972 / 979
页数:8
相关论文
共 21 条
[1]   Endolichenic fungi: A hidden source of bioactive metabolites [J].
Agrawal, Shivankar ;
Deshmukh, Sunil K. ;
Reddy, M. Sudhakara ;
Prasad, Ram ;
Goel, Mayurika .
SOUTH AFRICAN JOURNAL OF BOTANY, 2020, 134 :163-186
[2]  
[Anonymous], Molclus program, Version 1.10.
[3]  
[Anonymous], 2016, GAUSSIAN 16 REV C01
[4]   Reproducible molecular networking of untargeted mass spectrometry data using GNPS [J].
Aron, Allegra T. ;
Gentry, Emily C. ;
McPhail, Kerry L. ;
Nothias, Louis-Felix ;
Nothias-Esposito, Melissa ;
Bouslimani, Amina ;
Petras, Daniel ;
Gauglitz, Julia M. ;
Sikora, Nicole ;
Vargas, Fernando ;
van Der Hooft, Justin J. J. ;
Ernst, Madeleine ;
Bin Kang, Kyo ;
Aceves, Christine M. ;
Caraballo-Rodriguez, Andres Mauricio ;
Koester, Irina ;
Weldon, Kelly C. ;
Bertrand, Samuel ;
Roullier, Catherine ;
Sun, Kunyang ;
Tehan, Richard M. ;
Boya P, Cristopher A. ;
Christian, Martin H. ;
Gutierrez, Marcelino ;
Ulloa, Aldo Moreno ;
Mora, Javier Andres Tejeda ;
Mojica-Flores, Randy ;
Lakey-Beitia, Johant ;
Vasquez-Chaves, Victor ;
Zhang, Yilue ;
Calderon, Angela, I ;
Tayler, Nicole ;
Keyzers, Robert A. ;
Tugizimana, Fidele ;
Ndlovu, Nombuso ;
Aksenov, Alexander A. ;
Jarmusch, Alan K. ;
Schmid, Robin ;
Truman, Andrew W. ;
Bandeira, Nuno ;
Wang, Mingxun ;
Dorrestein, Pieter C. .
NATURE PROTOCOLS, 2020, 15 (06) :1954-1991
[5]   Botryane Sesquiterpenoids, Cyclopentadepsipeptides, Xanthones, and Trichothecenes from Trichoderma oligosporum [J].
Chen, Baosong ;
Li, Erwei ;
Liu, Li ;
Liao, Mingfang ;
Zhu, Zhaoxiang ;
Zhuang, Wenying ;
Bao, Li ;
Liu, Hongwei .
PLANTA MEDICA, 2018, 84 (14) :1055-1063
[6]  
Cockerill F., 2012, Methods for dilution antimicrobial susceptibility tests for bacteria that grow aerobically: approved standard
[7]   The cycloaspeptides: uncovering a new model for methylated nonribosomal peptide biosynthesis [J].
de Mattos-Shipley, Kate M. J. ;
Greco, Claudio ;
Heard, David M. ;
Hough, Gemma ;
Mulholland, Nicholas P. ;
Vincent, Jason L. ;
Micklefield, Jason ;
Simpson, Thomas J. ;
Willis, Christine L. ;
Cox, Russell J. ;
Bailey, Andrew M. .
CHEMICAL SCIENCE, 2018, 9 (17) :4109-4117
[8]   A nonempirical method using LC/MS for determination of the absolute configuration of constituent amino acids in a peptide: Combination of Marfey's method with mass spectrometry and its practical application [J].
Fujii, K ;
Ikai, Y ;
Oka, H ;
Suzuki, M ;
Harada, K .
ANALYTICAL CHEMISTRY, 1997, 69 (24) :5146-5151
[9]   A nonempirical method using LC/MS for determination of the absolute configuration of constituent amino acids in a peptide: Elucidation of limitations of Marfey's method and of its separation mechanism [J].
Fujii, K ;
Ikai, Y ;
Mayumi, T ;
Oka, H ;
Suzuki, M ;
Harada, K .
ANALYTICAL CHEMISTRY, 1997, 69 (16) :3346-3352
[10]   Combining the Power of J Coupling and DP4 Analysis on Stereochemical Assignments: The J-DP4 Methods [J].
Grimblat, Nicolas ;
Gavin, Jose A. ;
Hernandez Daranas, Antonio ;
Sarotti, Ariel M. .
ORGANIC LETTERS, 2019, 21 (11) :4003-4007