Taverna: a tool for the composition and enactment of bioinformatics workflows

被引:852
作者
Oinn, T
Addis, M
Ferris, J
Marvin, D
Senger, M
Greenwood, M
Carver, T
Glover, K
Pocock, MR
Wipat, A
Li, P [1 ]
机构
[1] Newcastle Univ, Sch Comp Sci, Newcastle Upon Tyne NE1 7RU, Tyne & Wear, England
[2] EMBL European Bioinformat Inst, Cambridge CB10 1SD, England
[3] Univ Southampton, IT Innovat Ctr, Southampton SO16 7NP, Hants, England
[4] Univ Manchester, Dept Comp Sci, Manchester M13 9PL, Lancs, England
[5] MRC, Rosalind Franklin Ctr Genom Res, Cambridge CB10 1SB, England
[6] Univ Nottingham, Sch Comp Sci & Informat Technol, Nottingham NG8 1BB, England
基金
英国工程与自然科学研究理事会;
关键词
D O I
10.1093/bioinformatics/bth361
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
Motivation: In silico experiments in bioinformatics involve the co-ordinated use of computational tools and information repositories. A growing number of these resources are being made available with programmatic access in the form of Web services. Bioinformatics scientists will need to orchestrate these Web services in workflows as part of their analyses. Results: The Taverna project has developed a tool for the composition and enactment of bioinformatics workflows for the life sciences community. The tool includes a workbench application which provides a graphical user interface for the composition of workflows. These workflows are written in a new language called the simple conceptual unified flow language (Scufl), where by each step within a workflow represents one atomic task. Two examples are used to illustrate the ease by which in silico experiments can be represented as Scufl workflows using the workbench application.
引用
收藏
页码:3045 / 3054
页数:10
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