Reorganization and expansion of the nidoviral family Arteriviridae

被引：283

作者：

Kuhn, Jens H. ^{[1
]}

Lauck, Michael ^{[14
]}

Bailey, Adam L. ^{[14
]}

Shchetinin, Alexey M. ^{[3
]}

Vishnevskaya, Tatyana V. ^{[3
]}

Bao, Yiming ^{[4
]}

Ng, Terry Fei Fan ^{[5
]}

LeBreton, Matthew ^{[6
,7
]}

Schneider, Bradley S. ^{[7
]}

Gillis, Amethyst ^{[7
]}

Tamoufe, Ubald ^{[8
]}

Diffo, Joseph Le Doux ^{[8
]}

Takuo, Jean Michel ^{[8
]}

Kondov, Nikola O. ^{[5
]}

Coffey, Lark L. ^{[15
]}

Wolfe, Nathan D. ^{[7
]}

Delwart, Eric ^{[5
]}

Clawson, Anna N. ^{[1
]}

Postnikova, Elena ^{[1
]}

Bollinger, Laura ^{[1
]}

Lackemeyer, Matthew G. ^{[1
]}

Radoshitzky, Sheli R. ^{[9
]}

Palacios, Gustavo ^{[9
]}

Wada, Jiro ^{[1
]}

Shevtsova, Zinaida V. ^{[10
]}

Jahrling, Peter B. ^{[1
]}

Lapin, Boris A. ^{[11
]}

Deriabin, Petr G. ^{[3
]}

Dunowska, Magdalena ^{[12
]}

Alkhovsky, Sergey V. ^{[3
]}

Rogers, Jeffrey ^{[13
]}

Friedrich, Thomas C. ^{[2
,14
]}

O'Connor, David H. ^{[14
,16
]}

Goldberg, Tony L. ^{[2
,14
]}

机构：

[1] NIAID, Integrated Res Facil Ft Detrick IRF Frederick, Div Clin Res, NIH, B-8200 Res Plaza, Frederick, MD 21702 USA

[2] Univ Wisconsin, Sch Vet Med, Dept Pathobiol Sci, Madison, WI 53706 USA

[3] Minist Hlth Russian Federat, DI Ivanovskii Virol Inst, Fed Res Ctr Epidemiol & Microbiol, Moscow, Russia

[4] NIH, Informat Engn Branch, Natl Ctr Biotechnol Informat, Natl Lib Med, Bldg 10, Bethesda, MD 20892 USA

[5] Blood Syst Res Inst, San Francisco, CA USA

[6] Mosaic, Yaounde, Cameroon

[7] Metabiota, San Francisco, CA USA

[8] Global Viral Cameroon, Yaounde, Cameroon

[9] US Army, Med Res Inst Infect Dis, Frederick, MD USA

[10] Sci Res Inst Expt Pathol & Therapy, Sukhumi, Autonomous Repu, Georgia

[11] Russian Acad Med Sci, Sci Res Inst Med Primatol, Soci, Russia

[12] Massey Univ, Inst Vet Anim & Biomed Sci, Palmerston North, New Zealand

[13] Baylor Coll Med, Human Genome Sequencing Ctr, Houston, TX 77030 USA

[14] Wisconsin Natl Primate Res Ctr, Madison, WI 53715 USA

[15] Univ Calif Davis, Ctr Vectorborne Dis, Dept Pathol Microbiol & Immunol, Sch Vet Med, Davis, CA 95616 USA

[16] Univ Wisconsin, Dept Pathol & Lab Med, Sch Med & Publ Hlth, Madison, WI 53706 USA

来源：

ARCHIVES OF VIROLOGY | 2016年 / 161卷 / 03期

基金：

美国国家卫生研究院;

关键词：

SIMIAN HEMORRHAGIC-FEVER; RESPIRATORY SYNDROME VIRUS; EQUINE ARTERITIS VIRUS; SUBGENOMIC MESSENGER-RNAS; INTERNATIONAL COMMITTEE; TAXONOMIC PROPOSALS; RATIFICATION VOTE; STANDARDIZED NOMENCLATURE; SWINE INFERTILITY; EASTERN-EUROPE;

D O I：

10.1007/s00705-015-2672-z

中图分类号：

Q93 [微生物学];

学科分类号：

071005 ; 100705 ;

摘要：

The family Arteriviridae presently includes a single genus Arterivirus. This genus includes four species as the taxonomic homes for equine arteritis virus (EAV), lactate dehydrogenase-elevating virus (LDV), porcine respiratory and reproductive syndrome virus (PRRSV), and simian hemorrhagic fever virus (SHFV), respectively. A revision of this classification is urgently needed to accommodate the recent description of eleven highly divergent simian arteriviruses in diverse African nonhuman primates, one novel arterivirus in an African forest giant pouched rat, and a novel arterivirus in common brushtails in New Zealand. In addition, the current arterivirus nomenclature is not in accordance with the most recent version of the International Code of Virus Classification and Nomenclature. Here we outline an updated, amended, and improved arterivirus taxonomy based on current data. Taxon-specific sequence cut-offs are established relying on a newly established open reading frame 1b phylogeny and pairwise sequence comparison (PASC) of coding-complete arterivirus genomes. As a result, the current genus Arterivirus is replaced by five genera: Equartevirus (for EAV), Rodartevirus (LDV + PRRSV), Simartevirus (SHFV + simian arteriviruses), Nesartevirus (for the arterivirus from forest giant pouched rats), and Dipartevirus (common brushtail arterivirus). The current species Porcine reproductive and respiratory syndrome virus is divided into two species to accommodate the clear divergence of the European and American "types" of PRRSV, both of which now receive virus status. The current species Simian hemorrhagic fever virus is divided into nine species to accommodate the twelve known simian arteriviruses. Non-Latinized binomial species names are introduced to replace all current species names to clearly differentiate them from virus names, which remain largely unchanged.

引用

页码：755 / 768

页数：14

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