Accurate Segmentation of Nuclear Regions with Multi-Organ Histopathology Images Using Artificial Intelligence for Cancer Diagnosis in Personalized Medicine

被引:24
作者
Mahmood, Tahir [1 ]
Owais, Muhammad [1 ]
Noh, Kyoung Jun [1 ]
Yoon, Hyo Sik [1 ]
Koo, Ja Hyung [1 ]
Haider, Adnan [1 ]
Sultan, Haseeb [1 ]
Park, Kang Ryoung [1 ]
机构
[1] Dongguk Univ, Div Elect & Elect Engn, 30 Pildong Ro,1 Gil, Seoul 04620, South Korea
基金
新加坡国家研究基金会;
关键词
multi-organ histopathology images; triple-negative breast cancer; The Cancer Genome Atlas; artificial intelligence; nuclear segmentation; stain normalization; cancer grading and prognosis; CLASSIFICATION; RECOGNITION;
D O I
10.3390/jpm11060515
中图分类号
R19 [保健组织与事业(卫生事业管理)];
学科分类号
摘要
Accurate nuclear segmentation in histopathology images plays a key role in digital pathology. It is considered a prerequisite for the determination of cell phenotype, nuclear morphometrics, cell classification, and the grading and prognosis of cancer. However, it is a very challenging task because of the different types of nuclei, large intraclass variations, and diverse cell morphologies. Consequently, the manual inspection of such images under high-resolution microscopes is tedious and time-consuming. Alternatively, artificial intelligence (AI)-based automated techniques, which are fast and robust, and require less human effort, can be used. Recently, several AI-based nuclear segmentation techniques have been proposed. They have shown a significant performance improvement for this task, but there is room for further improvement. Thus, we propose an AI-based nuclear segmentation technique in which we adopt a new nuclear segmentation network empowered by residual skip connections to address this issue. Experiments were performed on two publicly available datasets: (1) The Cancer Genome Atlas (TCGA), and (2) Triple-Negative Breast Cancer (TNBC). The results show that our proposed technique achieves an aggregated Jaccard index (AJI) of 0.6794, Dice coefficient of 0.8084, and F1-measure of 0.8547 on TCGA dataset, and an AJI of 0.7332, Dice coefficient of 0.8441, precision of 0.8352, recall of 0.8306, and F1-measure of 0.8329 on the TNBC dataset. These values are higher than those of the state-of-the-art methods.
引用
收藏
页数:25
相关论文
共 60 条
[1]   Outcomes of Triple-Negative Breast Cancers (TNBC) Compared with Non-TNBC: Does the Survival Vary for All Stages? [J].
Agarwal, Gaurav ;
Nanda, Gitika ;
Lal, Punita ;
Mishra, Anjali ;
Agarwal, Amit ;
Agrawal, Vinita ;
Krishnani, Narendra .
WORLD JOURNAL OF SURGERY, 2016, 40 (06) :1362-1372
[2]   An Integrated Region-, Boundary-, Shape-Based Active Contour for Multiple Object Overlap Resolution in Histological Imagery [J].
Ali, Sahirzeeshan ;
Madabhushi, Anant .
IEEE TRANSACTIONS ON MEDICAL IMAGING, 2012, 31 (07) :1448-1460
[3]   A High-Performance System for Robust Stain Normalization of Whole-Slide Images in Histopathology [J].
Anghel, Andreea ;
Stanisavljevic, Milos ;
Andani, Sonali ;
Papandreou, Nikolaos ;
Rueschoff, Jan Hendrick ;
Wild, Peter ;
Gabrani, Maria ;
Pozidis, Haralampos .
FRONTIERS IN MEDICINE, 2019, 6
[4]  
[Anonymous], NUCL NET MODEL ALGOR
[5]  
[Anonymous], GEFORCE GTX 1070
[6]  
[Anonymous], INTEL CORE I7 7700 P
[7]   OR-Skip-Net: Outer residual skip network for skin segmentation in non-ideal situations [J].
Arsalan, Muhammad ;
Kim, Dong Seop ;
Owais, Muhammad ;
Park, Kang Ryoung .
EXPERT SYSTEMS WITH APPLICATIONS, 2020, 141
[8]  
Bach SH, 2017, J MACH LEARN RES, V18
[9]  
BARTELS PH, 1988, ANAL QUANT CYTOL, V10, P299
[10]   Adversarial Stain Transfer for Histopathology Image Analysis [J].
BenTaieb, Aicha ;
Hamarneh, Ghassan .
IEEE TRANSACTIONS ON MEDICAL IMAGING, 2018, 37 (03) :792-802