Single-cell immune landscape of human atherosclerotic plaques

被引:697
作者
Fernandez, Dawn M. [1 ]
Rahman, Adeeb H. [2 ,3 ,4 ]
Fernandez, Nicolas F. [3 ]
Chudnovskiy, Aleksey [2 ]
Amir, El-ad David [3 ]
Amadori, Letizia [4 ]
Khan, Nayaab S. [1 ]
Wong, Christine K. [1 ]
Shamailova, Roza [1 ]
Hill, Christopher A. [1 ]
Wang, Zichen [5 ]
Remark, Romain [2 ,11 ]
Li, Jennifer R. [6 ]
Pina, Christian [6 ]
Faries, Christopher [6 ]
Awad, Ahmed J. [7 ,12 ]
Moss, Noah [1 ]
Bjorkegren, Johan L. M. [4 ,8 ]
Kim-Schulze, Seunghee [2 ,3 ,9 ]
Gnjatic, Sacha [2 ,3 ,10 ]
Ma'ayan, Avi [5 ]
Mocco, J. [7 ]
Faries, Peter [6 ]
Merad, Miriam [2 ,3 ,10 ]
Giannarelli, Chiara [1 ,2 ,4 ]
机构
[1] Icahn Sch Med Mt Sinai, Cardiovasc Res Ctr, Dept Med, New York, NY 10029 USA
[2] Icahn Sch Med Mt Sinai, Precis Immunol Inst, New York, NY 10029 USA
[3] Icahn Sch Med Mt Sinai, Human Immune Monitoring Ctr, New York, NY 10029 USA
[4] Icahn Sch Med Mt Sinai, Dept Genet & Genom Sci, New York, NY 10029 USA
[5] Icahn Sch Med Mt Sinai, Mt Sinai Ctr Bioinformat, Dept Pharmacol Sci, New York, NY 10029 USA
[6] Icahn Sch Med Mt Sinai, Dept Surg, Vasc Div, New York, NY 10029 USA
[7] Icahn Sch Med Mt Sinai, Cerebrovasc Ctr, Dept Neurosurg, New York, NY 10029 USA
[8] Karolinska Inst, Karolinska Univ Sjukhuset, Dept Med, Integrated Cardio MetabolicCtr, Huddinge, Sweden
[9] Icahn Sch Med Mt Sinai, Hematol & Med Oncol Div, Tish Canc Inst, New York, NY 10029 USA
[10] Icahn Sch Med Mt Sinai, Dept Oncol Sci, Tish Canc Inst, New York, NY 10029 USA
[11] Innate Pharma, Marseille, France
[12] Med Coll Wisconsin, Dept Neurosurg, Milwaukee, WI 53226 USA
关键词
ACUTE CORONARY SYNDROMES; T-CELLS; MACROPHAGES; EXPRESSION; DISEASE; PHAGOCYTOSIS; PATHOGENESIS; ACTIVATION; THERAPY; DENSITY;
D O I
10.1038/s41591-019-0590-4
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Atherosclerosis is driven by multifaceted contributions of the immune system within the circulation and at vascular focal sites. However, specific characteristics of dysregulated immune cells within atherosclerotic lesions that lead to clinical events such as ischemic stroke or myocardial infarction are poorly understood. Here, using single-cell proteomic and transcriptomic analyses, we uncovered distinct features of both T cells and macrophages in carotid artery plaques of patients with clinically symptomatic disease (recent stroke or transient ischemic attack) compared to asymptomatic disease (no recent stroke). Plaques from symptomatic patients were characterized by a distinct subset of CD4(+) T cells and by T cells that were activated and differentiated. Moreover, some T cell subsets in these plaques presented markers of T cell exhaustion. Additionally, macrophages from these plaques contained alternatively activated phenotypes, including subsets associated with plaque vulnerability. In plaques from asymptomatic patients, T cells and macrophages were activated and displayed evidence of interleukin-1 beta signaling. The identification of specific features of innate and adaptive immune cells in plaques that are associated with cerebrovascular events may enable the design of more precisely tailored cardiovascular immunotherapies.
引用
收藏
页码:1576 / +
页数:26
相关论文
共 79 条
[1]   Development of a Comprehensive Antibody Staining Database Using a Standardized Analytics Pipeline [J].
Amir, El-ad David ;
Lee, Brian ;
Badoual, Paul ;
Gordon, Martin ;
Guo, Xinzheng, V ;
Merad, Miriam ;
Rahman, Adeeb H. .
FRONTIERS IN IMMUNOLOGY, 2019, 10
[2]   viSNE enables visualization of high dimensional single-cell data and reveals phenotypic heterogeneity of leukemia [J].
Amir, El-ad David ;
Davis, Kara L. ;
Tadmor, Michelle D. ;
Simonds, Erin F. ;
Levine, Jacob H. ;
Bendall, Sean C. ;
Shenfeld, Daniel K. ;
Krishnaswamy, Smita ;
Nolan, Garry P. ;
Pe'er, Dana .
NATURE BIOTECHNOLOGY, 2013, 31 (06) :545-+
[3]   Interleukin-6 (IL-6) prevents activation-induced cell death: IL-2-independent inhibition of Fas/fasL expression and cell death [J].
Ayroldi, E ;
Zollo, O ;
Cannarile, L ;
D' Adamio, FD ;
Grohmann, U ;
Delfino, DV ;
Riccardi, C .
BLOOD, 1998, 92 (11) :4212-4219
[4]   Single-Cell Map of Diverse Immune Phenotypes in the Breast Tumor Microenvironment [J].
Azizi, Elham ;
Carr, Ambrose J. ;
Plitas, George ;
Cornish, Andrew E. ;
Konopacki, Catherine ;
Prabhakaran, Sandhya ;
Nainys, Juozas ;
Wu, Kenmin ;
Kiseliovas, Vaidotas ;
Setty, Manu ;
Choi, Kristy ;
Fromme, Rachel M. ;
Phuong Dao ;
McKenney, Peter T. ;
Wasti, Ruby C. ;
Kadaveru, Krishna ;
Mazutis, Linas ;
Rudensky, Alexander Y. ;
Pe'er, Dana .
CELL, 2018, 174 (05) :1293-+
[5]   Opposing roles for RhoH GTPase during T-cell migration and activation [J].
Baker, Christina M. ;
Comrie, William A. ;
Hyun, Young-Min ;
Chung, Hung-Li ;
Fedorchuk, Christine A. ;
Lim, Kihong ;
Brakebusch, Cord ;
McGrath, James L. ;
Waugh, Richard E. ;
Meier-Schellersheim, Martin ;
Kim, Minsoo .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2012, 109 (26) :10474-10479
[6]   Fast unfolding of communities in large networks [J].
Blondel, Vincent D. ;
Guillaume, Jean-Loup ;
Lambiotte, Renaud ;
Lefebvre, Etienne .
JOURNAL OF STATISTICAL MECHANICS-THEORY AND EXPERIMENT, 2008,
[7]   Impairment of the Programmed Cell Death-1 Pathway Increases Atherosclerotic Lesion Development and Inflammation [J].
Bu, De-xiu ;
Tarrio, Margarite ;
Maganto-Garcia, Elena ;
Stavrakis, George ;
Tajima, Goro ;
Lederer, James ;
Jarolim, Petr ;
Freeman, Gordon J. ;
Sharpe, Arlene H. ;
Lichtman, Andrew H. .
ARTERIOSCLEROSIS THROMBOSIS AND VASCULAR BIOLOGY, 2011, 31 (05) :1100-U411
[8]   Using synthetic templates to design an unbiased multiplex PCR assay [J].
Carlson, Christopher S. ;
Emerson, Ryan O. ;
Sherwood, Anna M. ;
Desmarais, Cindy ;
Chung, Moon-Wook ;
Parsons, Joseph M. ;
Steen, Michelle S. ;
LaMadrid-Herrmannsfeldt, Marissa A. ;
Williamson, David W. ;
Livingston, Robert J. ;
Wu, David ;
Wood, Brent L. ;
Rieder, Mark J. ;
Robins, Harlan .
NATURE COMMUNICATIONS, 2013, 4
[9]   Enrichr: interactive and collaborative HTML']HTML5 gene list enrichment analysis tool [J].
Chen, Edward Y. ;
Tan, Christopher M. ;
Kou, Yan ;
Duan, Qiaonan ;
Wang, Zichen ;
Meirelles, Gabriela Vaz ;
Clark, Neil R. ;
Ma'ayan, Avi .
BMC BIOINFORMATICS, 2013, 14
[10]   Single-Cell RNA-Seq Reveals the Transcriptional Landscape and Heterogeneity of Aortic Macrophages in Murine Atherosclerosis [J].
Cochain, Clement ;
Vafadarnejad, Ehsan ;
Arampatzi, Panagiota ;
Pelisek, Jaroslav ;
Winkels, Holger ;
Ley, Klaus ;
Wolf, Dennis ;
Saliba, Antoine-Emmanuel ;
Zernecke, Alma .
CIRCULATION RESEARCH, 2018, 122 (12) :1661-1674