Single-cell sequencing: a promising approach for uncovering the mechanisms of tumor metastasis

被引:61
作者
Han, Yingying [1 ]
Wang, Dan [1 ]
Peng, Lushan [1 ]
Huang, Tao [1 ]
He, Xiaoyun [2 ]
Wang, Junpu [1 ,3 ,4 ]
Ou, Chunlin [1 ,5 ]
机构
[1] Cent South Univ, Xiangya Hosp, Dept Pathol, Changsha 410008, Hunan, Peoples R China
[2] Cent South Univ, Xiangya Hosp, Dept Ultrasound Imaging, Changsha 410008, Hunan, Peoples R China
[3] Cent South Univ, Sch Basic Med, Dept Pathol, Changsha 410031, Hunan, Peoples R China
[4] Cent South Univ, Xiangya Hosp, Key Lab Hunan Prov Neurodegenerat Disorders, Changsha 410008, Hunan, Peoples R China
[5] Cent South Univ, Xiangya Hosp, Natl Clin Res Ctr Geriatr Disorders, Changsha, Peoples R China
基金
中国国家自然科学基金; 中国博士后科学基金;
关键词
Single-cell sequencing; Tumor metastasis; Tumor heterogeneity; Tumor microenvironment; Artificial intelligence; Tumor marker; Targeted therapy; EPITHELIAL-MESENCHYMAL TRANSITION; BREAST-CANCER METASTASIS; MESSENGER-RNA-SEQ; GENE-EXPRESSION; INTRATUMORAL HETEROGENEITY; MOLECULAR-MECHANISMS; EARLY DISSEMINATION; POOR-PROGNOSIS; P-GLYCOPROTEIN; EVOLUTION;
D O I
10.1186/s13045-022-01280-w
中图分类号
R73 [肿瘤学];
学科分类号
100214 ;
摘要
Single-cell sequencing (SCS) is an emerging high-throughput technology that can be used to study the genomics, transcriptomics, and epigenetics at a single cell level. SCS is widely used in the diagnosis and treatment of various diseases, including cancer. Over the years, SCS has gradually become an effective clinical tool for the exploration of tumor metastasis mechanisms and the development of treatment strategies. Currently, SCS can be used not only to analyze metastasis-related malignant biological characteristics, such as tumor heterogeneity, drug resistance, and microenvironment, but also to construct metastasis-related cell maps for predicting and monitoring the dynamics of metastasis. SCS is also used to identify therapeutic targets related to metastasis as it provides insights into the distribution of tumor cell subsets and gene expression differences between primary and metastatic tumors. Additionally, SCS techniques in combination with artificial intelligence (AI) are used in liquid biopsy to identify circulating tumor cells (CTCs), thereby providing a novel strategy for treating tumor metastasis. In this review, we summarize the potential applications of SCS in the field of tumor metastasis and discuss the prospects and limitations of SCS to provide a theoretical basis for finding therapeutic targets and mechanisms of metastasis.
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页数:19
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共 167 条
  • [1] Circulating Tumor Cell Clusters Are Oligoclonal Precursors of Breast Cancer Metastasis
    Aceto, Nicola
    Bardia, Aditya
    Miyamoto, David T.
    Donaldson, Maria C.
    Wittner, Ben S.
    Spencer, Joel A.
    Yu, Min
    Pely, Adam
    Engstrom, Amanda
    Zhu, Huili
    Brannigan, Brian W.
    Kapur, Ravi
    Stott, Shannon L.
    Shioda, Toshi
    Ramaswamy, Sridhar
    Ting, David T.
    Lin, Charles P.
    Toner, Mehmet
    Haber, Daniel A.
    Maheswaran, Shyamala
    [J]. CELL, 2014, 158 (05) : 1110 - 1122
  • [2] Aicher TP, 2019, METHODS MOL BIOL, V1979, P111, DOI 10.1007/978-1-4939-9240-9_8
  • [3] Tutorial: guidelines for the computational analysis of single-cell RNA sequencing data
    Andrews, Tallulah S.
    Kiselev, Vladimir Yu
    McCarthy, Davis
    Hemberg, Martin
    [J]. NATURE PROTOCOLS, 2021, 16 (01) : 1 - 9
  • [4] The blood-brain barrier and blood-tumour barrier in brain tumours and metastases
    Arvanitis, Costas D.
    Ferraro, Gino B.
    Jain, Rakesh K.
    [J]. NATURE REVIEWS CANCER, 2020, 20 (01) : 26 - 41
  • [5] Single-Cell Map of Diverse Immune Phenotypes in the Breast Tumor Microenvironment
    Azizi, Elham
    Carr, Ambrose J.
    Plitas, George
    Cornish, Andrew E.
    Konopacki, Catherine
    Prabhakaran, Sandhya
    Nainys, Juozas
    Wu, Kenmin
    Kiseliovas, Vaidotas
    Setty, Manu
    Choi, Kristy
    Fromme, Rachel M.
    Phuong Dao
    McKenney, Peter T.
    Wasti, Ruby C.
    Kadaveru, Krishna
    Mazutis, Linas
    Rudensky, Alexander Y.
    Pe'er, Dana
    [J]. CELL, 2018, 174 (05) : 1293 - +
  • [6] Single-cell sequencing technology in tumor research
    Bai, Xue
    Li, Yuxuan
    Zeng, Xuemei
    Zhao, Qiang
    Zhang, Zhiwei
    [J]. CLINICA CHIMICA ACTA, 2021, 518 : 101 - 109
  • [7] EMT, MET, Plasticity, and Tumor Metastasis
    Bakir, Basil
    Chiarella, Anna M.
    Pitarresi, Jason R.
    Rustgi, Anil K.
    [J]. TRENDS IN CELL BIOLOGY, 2020, 30 (10) : 764 - 776
  • [8] Integrated analysis of single-cell RNA-seq and bulk RNA-seq unravels tumour heterogeneity plus M2-like tumour-associated macrophage infiltration and aggressiveness in TNBC
    Bao, Xuanwen
    Shi, Run
    Zhao, Tianyu
    Wang, Yanfang
    Anastasov, Natasa
    Rosemann, Michael
    Fang, Weijia
    [J]. CANCER IMMUNOLOGY IMMUNOTHERAPY, 2021, 70 (01) : 189 - 202
  • [9] Systematic RNA interference reveals that oncogenic KRAS-driven cancers require TBK1
    Barbie, David A.
    Tamayo, Pablo
    Boehm, Jesse S.
    Kim, So Young
    Moody, Susan E.
    Dunn, Ian F.
    Schinzel, Anna C.
    Sandy, Peter
    Meylan, Etienne
    Scholl, Claudia
    Froehling, Stefan
    Chan, Edmond M.
    Sos, Martin L.
    Michel, Kathrin
    Mermel, Craig
    Silver, Serena J.
    Weir, Barbara A.
    Reiling, Jan H.
    Sheng, Qing
    Gupta, Piyush B.
    Wadlow, Raymond C.
    Le, Hanh
    Hoersch, Sebastian
    Wittner, Ben S.
    Ramaswamy, Sridhar
    Livingston, David M.
    Sabatini, David M.
    Meyerson, Matthew
    Thomas, Roman K.
    Lander, Eric S.
    Mesirov, Jill P.
    Root, David E.
    Gilliland, D. Gary
    Jacks, Tyler
    Hahn, William C.
    [J]. NATURE, 2009, 462 (7269) : 108 - U122
  • [10] Spatially and functionally distinct subclasses of breast cancer-associated fibroblasts revealed by single cell RNA sequencing
    Bartoschek, Michael
    Oskolkov, Nikolay
    Bocci, Matteo
    Lovrot, John
    Larsson, Christer
    Sommarin, Mikael
    Madsen, Chris D.
    Lindgren, David
    Pekar, Gyula
    Karlsson, Goran
    Ringner, Markus
    Bergh, Jonas
    Bjorklund, Asa
    Pietras, Kristian
    [J]. NATURE COMMUNICATIONS, 2018, 9